Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2832 ATGATTGTCTTACCTTCTTTCTCCCGCTATGCGCAATCAACGGTTGCCATTGTGGTTATCATTTTTGTACTATTCCATCAAACTTGCTCCGCTAAGCATCGCCCATCCTGTCCTCCTTCTTCATGCGGCAAAATTCGCAACATAACCTATCCATTTCGACTGAAAGGCGATCCACGCGGTTGCGGCCTCCAAAGGTACGAATTGGATTGCGTGAACAACGTGACAGTGTTAACTCTGTTTTCAGGGAGATACCATGTGCAGGATATCAATTACAAGAGATACCAGATCCGACTGACTGATGCCGGTGTTGTGGAGGACACTGCTTGCTCCCTTCCTCGCTATTTCTTATATGCACCAAATTTTAGTTATCTCAGTGCTCCTTACTATTCTACACCAGATCCGCTAACTTTTAGGGATTCGGAGTTGGAGCCGTTGGGTGACTATGAGTATCCAAGCATAGGGTTCTTAAACTGTACTAATCCAGTGACTGATGACCCTCGATATGTGGAAGCGGATACGGGTCGTTGTAATTCCGGAGGGCATATTTATGCCGTTCTGGATTTAGACTCCAGTTTTAGGATGATGGACATCAAGGTTGGGTGTCGTCTAAAGGTTGTCACCCTTGCAGACTTGATCATAAAGTTGAACGTTACAGAATATGGCAATGACAAGATCACTTACATAGAATATGTCAATGACACGAACGCTTCCTATGCTGATATCCAAAAGTGGCTGAATGACGGATTTCGGTTGTCTTGGTTGATACCAGTTATTTGTAGGGAGCAATGCAGAAAGGATAACAGATGCTATCTCAACGAAACCACACAACAAGTTCAGTGTGATCCGGGTTCCTGCTATTACGCCACCGGTGTCCGTAGGAATTGTGgaattctaccacagaTTCTTGATTATATAGAATCATATTTTGAGGACATTATAGCTGGATTATTCAGTATTATGGGAGGATTTGTTCTATCAGTATTCATGGTAGCCAGATATCTATTTGGAGTTACATTCTTTCTTGGGCTATTGTTTTATAAGTGGCGACGAAGACATTTATCAATGTATGAAAACATTGAAAGCTTTTTGCTACACAACAATCTAAATCCCATTAGGTATGAATACAGAGAAATCAAGAAAATGACCCGAGGTTTCAAAGTTAAATTGGGTCACGGAGGTTTCGGCTTAGTATACAAAGGAAAGCTTCGAAGCGGGCTAGATGTAGCAATAAAGATGTTGAGCAAATCCAAATCTAATGGACAAGAGTTTATTAGTGAAGTGGCTACCATTGGAAGAATACACCATCTGAATGTGGTACATCTTATTGGATATTGTGTTGAAGGAAAAAAGCGTGCTCTAGTTTATGAATACATGCCAAATGGGTCATTGGATAAATACATTTTCTCTAAAGAAGGAAGTGTCCCTTTAAGTTATGCGAAAACATATGACATATCTCTTGGAATAGCTCATGGAATTGCATATCTACATCAAGGTTGTGATGTGCAAATTCTACATTTTGATATCAAGCCTCATAATATTCTTCTAGATGATAACTTCATTCCAAAGGTTTCTGATTTTGGACTTGCAAAGCTATATCCTGTAAATGATAGCATTGTCACTTTGACTGTTGCAAGAGGAACTTTGGGTTACATGGCTCCTGAATTGTTCTACAAAAATGTTGGAGGAGTATCTTATAAGGCTGACGTCTATAGCTTTGGTATGCTTTTGATGGAAATGGCGAGTAGGAGAAAGAACTCAAATCCTTGTGCAGAGCATTCAAGCCAACATTACTTCCCATTATGGATCTATGATCAattcaaagaagagaaagatgttGACATGGAAGATGCTTCAGAAGAGGATAAGATTTTAACAAAAAGGATGTTTATAGTTGCACTTTGGTGTATTCAGTTAAAACCGGGGGATCGTCCTTCAATGAATAAGGTAGTAGAGATGCTTGAAGGAAAAATTGAAAGCCTTGAAATGCCTCCAAGGCCCTCTTTTTACCCACATGAAATGTCTGGACCTAATGCCATAATCAGTTTTGACCAAACAACATGGAGTGATTCCACTAGCTTGGATACCTATCTTGGTGAACCTATAAATAGTGTTGGATGTGTATAA 2124 0.3936 MIVLPSFSRYAQSTVAIVVIIFVLFHQTCSAKHRPSCPPSSCGKIRNITYPFRLKGDPRGCGLQRYELDCVNNVTVLTLFSGRYHVQDINYKRYQIRLTDAGVVEDTACSLPRYFLYAPNFSYLSAPYYSTPDPLTFRDSELEPLGDYEYPSIGFLNCTNPVTDDPRYVEADTGRCNSGGHIYAVLDLDSSFRMMDIKVGCRLKVVTLADLIIKLNVTEYGNDKITYIEYVNDTNASYADIQKWLNDGFRLSWLIPVICREQCRKDNRCYLNETTQQVQCDPGSCYYATGVRRNCGILPQILDYIESYFEDIIAGLFSIMGGFVLSVFMVARYLFGVTFFLGLLFYKWRRRHLSMYENIESFLLHNNLNPIRYEYREIKKMTRGFKVKLGHGGFGLVYKGKLRSGLDVAIKMLSKSKSNGQEFISEVATIGRIHHLNVVHLIGYCVEGKKRALVYEYMPNGSLDKYIFSKEGSVPLSYAKTYDISLGIAHGIAYLHQGCDVQILHFDIKPHNILLDDNFIPKVSDFGLAKLYPVNDSIVTLTVARGTLGYMAPELFYKNVGGVSYKADVYSFGMLLMEMASRRKNSNPCAEHSSQHYFPLWIYDQFKEEKDVDMEDASEEDKILTKRMFIVALWCIQLKPGDRPSMNKVVEMLEGKIESLEMPPRPSFYPHEMSGPNAIISFDQTTWSDSTSLDTYLGEPINSVGCV 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2832 707 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 320 674 - -
Ssu7g2832 707 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 13 318 - -
Ssu7g2832 707 ProSiteProfiles Protein kinase domain profile. 383 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2832 707 Gene3D Phosphorylase Kinase; domain 1 360 457 - -
Ssu7g2832 707 SMART serkin_6 383 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2832 707 PANTHER RUST RESISTANCE KINASE LR10-RELATED 320 674 IPR045874 GO:0004672
Ssu7g2832 707 PANTHER RUST RESISTANCE KINASE LR10-RELATED 13 318 IPR045874 GO:0004672
Ssu7g2832 707 CDD STKc_IRAK 389 655 - -
Ssu7g2832 707 Gene3D Transferase(Phosphotransferase) domain 1 458 662 - -
Ssu7g2832 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
Ssu7g2832 707 Pfam Protein tyrosine and serine/threonine kinase 386 653 IPR001245 GO:0004672|GO:0006468
Ssu7g2832 707 SUPERFAMILY Protein kinase-like (PK-like) 368 654 IPR011009 -
Ssu7g2832 707 Pfam Wall-associated receptor kinase galacturonan-binding 37 100 IPR025287 GO:0030247
Ssu7g2832 707 ProSitePatterns Protein kinases ATP-binding region signature. 389 411 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2832 Ssu-Chr7 59268684 59271743 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2832 16 669 Receptor kinase-like Gene Family AT5G38260 33.580 2.85e-104 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Ssu7g2832 PK_Tyr_Ser-Thr 5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2832 - - gmx:100170745 863.218