Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2828 ATGtttaattttcagaaaatttctcttctattaACAATGTTGTTTCTGCTAGGGAAGCCTGTTATAAGCAAGAATCGGTGCACGGACAAGTGTGGACGCGTTCATATTCAATTTCCATTTTACCTCAGAAATCACACCACCAGCTATCCCCCTGGGTTCGGTCTGTTTTGTAACGATAAAGATGAGACTGTGCTGGAGCTTCCTGCTGTTCCAgttaaattatttgtcaaaagAATAGACTACAAGTCACAGAAAATCGAAATCTACGACCCTGAAAACTGCCTTCCCAAGGTGTTCTTAAAACTAGGCAATTCCTCTATTTATCCATTCAAATTCCAATCGCTTGGGTATGAACAGGGGAAGTATAACGTTTCCTTCTTCCTTTGTAATTCAATGTCATGCCCCATTTTCCAACTATCTTACAAAGACTTGTTTGATCCTGAAATGATATCATGCACCAAGGTGGAAGATGTTTTGTCCGTTGAGTGGTATGTGGAGGATGATTTGGACGGTCCCTATATAAACTCTATTATGAAATGGCCCAAACAGAACTGTAGTCACTGTGAAGCAGGAGGCCAAAAATGTAAATGGAAGAATGGTACCCAAGGTGAAACTGAATGTTTCATTTGTCCAACAAACACCATTCCAACATCAACTATTATACGTATTGTTGCAGGGGGAATAGTTGGTTTGATTCTTTTGCTGCTGCTGGTCAAGGCTTTGTTTCATGTGTATGGATATTTTAAGATGAAAGAAGAAGACCAGGCTCGGATAGAGAAATTCTTGGAGGATTACAGGGCAATGAAACCTACGAGATTCACTTATGCTGACATTAAGAGAATCACAAATGGGTTTAGTGAAAGTTTAGGGGAAGGAGCTCATGGGACAGTGTTCAAAGGAATGCTCTCCCGACAAATTCTCGTTGCTGTCAAGATACTCAATGACACAGTGGGAGATGGGAAGGACTTCATAAATGAAGTGGGAATCATTGGAAAAATTCATCACATTAATGTTGTTCGCTTGCTTGGATTCTGTGCGGATGGGTTCCACCGCGCTCTTGTCTACGATTTCTTCCCAAATGGTTCTCTTCAGAAATTCTTAGCTCCACCGGACAACAAGGATGGCTTCCTTGGTTGGGAGAAGTTGCAACAAATTGCTCTAGGCGTAGCCAGAGGGATTGAGTATCTCCATCTTGGTTGTGATCATAGAATACTTCACTTCGACATCAATCCTCACAATGTTTTACTAGACGACCACTTCTTCCCAAAAATCACCGATTTTGGACTCGCCAAGTTGTGTCCCAAAAATCAAAGCACAGTGTCTATGACTGCAGCCAGGGGAACCTTGGGCTACATTGCCCCCGAAGTTTTCTCAAGGAACTTTGGCAATGTGTCTTACAAGTCTGACATTTACAGCTACGGAATGTTGCTGCTAGAGATGGTGGGAGGaagaaagaatacaaaaatGTCAGCAGAGGAGAGTTTCCAAGTTCTGTACCCTGAATGGATCCATAATTTGCTGGAAGGCAGAGACGTTCAAGTTACTATTGAGGATGAGGGAGATGTTAAAATCGCAAAGAAACTTGCCATTGTAGGATTATGGTGCATTCAGTGGAATCCAGTGGACCGTCCATCCATGAAAACCGTGGTACAAATGCTTAAAGGAGATGGAGATGAGTTAATTGCACCCCCTACTCCTTTTGACATCACCGGTTCTTCTACAGCAAATACCCTTGTTCCAGCAAGACGTCAGAATTTCGAATTGGAAGTTATTCATGAAATAGAAGAGTAA 1791 0.4104 MFNFQKISLLLTMLFLLGKPVISKNRCTDKCGRVHIQFPFYLRNHTTSYPPGFGLFCNDKDETVLELPAVPVKLFVKRIDYKSQKIEIYDPENCLPKVFLKLGNSSIYPFKFQSLGYEQGKYNVSFFLCNSMSCPIFQLSYKDLFDPEMISCTKVEDVLSVEWYVEDDLDGPYINSIMKWPKQNCSHCEAGGQKCKWKNGTQGETECFICPTNTIPTSTIIRIVAGGIVGLILLLLLVKALFHVYGYFKMKEEDQARIEKFLEDYRAMKPTRFTYADIKRITNGFSESLGEGAHGTVFKGMLSRQILVAVKILNDTVGDGKDFINEVGIIGKIHHINVVRLLGFCADGFHRALVYDFFPNGSLQKFLAPPDNKDGFLGWEKLQQIALGVARGIEYLHLGCDHRILHFDINPHNVLLDDHFFPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTKMSAEESFQVLYPEWIHNLLEGRDVQVTIEDEGDVKIAKKLAIVGLWCIQWNPVDRPSMKTVVQMLKGDGDELIAPPTPFDITGSSTANTLVPARRQNFELEVIHEIEE 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2828 596 Pfam Wall-associated receptor kinase galacturonan-binding 27 90 IPR025287 GO:0030247
Ssu7g2828 596 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 31 595 - -
Ssu7g2828 596 ProSiteProfiles Protein kinase domain profile. 283 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2828 596 ProSitePatterns Protein kinases ATP-binding region signature. 289 311 IPR017441 GO:0005524
Ssu7g2828 596 Pfam Protein kinase domain 287 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2828 596 SUPERFAMILY Protein kinase-like (PK-like) 265 553 IPR011009 -
Ssu7g2828 596 PANTHER RUST RESISTANCE KINASE LR10-RELATED 31 595 IPR045874 GO:0004672
Ssu7g2828 596 Gene3D Transferase(Phosphotransferase) domain 1 358 560 - -
Ssu7g2828 596 Gene3D Phosphorylase Kinase; domain 1 256 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2828 Ssu-Chr7 59112938 59114814 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2828 31 566 Receptor kinase-like Gene Family AT1G66910 35.216 1.27e-104 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Ssu7g2828 Pkinase 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2828 - - gmx:102669457 1019.22