Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2827 ATGATGTTCTTAGGGCATTTCATCGATCAGTTTGCACTCACTGGTGAGTCTTTGCCTGCTTCCAAGAACCCTGGTGATGAAGTCTTCTCTAGGTCCACAGTGAAGCAAGAAGAGATTGAGGTTGTTGTAATCGCTACGTCGAcaatcaaaaatttatattcagtGTTGGGGAGGTTTTACACAGGGCATGAGATTAAGTTATCAAAGATCACATATTTCTTTCTCGGGTCTGTTCTGAGACTGTGGGTGGGCTTCCAGGTTGGAATGTCTATTGATCCAAAACTTCTTGTTTCAAACTTCCAAGTCATCACAGGGACACTAGGACTCTTAATATGCGAGTTGGTCTTCTTGCTCCTGGTGGGGAATTTGCTTGTGTTTGTTTTCAACATACAGGCAAAGCTTCAGCAGCTTCAGCTTCAAGTGCAAGCTTTGGTTTGTATACCCAGTAATGTAGCTGTGGACCAGCTGGCTGAAAGGATAAGTGCTACTGGTTTAAGTACAAATAAATTGCTTGATTTTGTCAATTTGctgatatttttcatttcacttGTGTCTAAGGAACTACCACTGGATTGCTTTGTCTGA 585 0.4 MMFLGHFIDQFALTGESLPASKNPGDEVFSRSTVKQEEIEVVVIATSTIKNLYSVLGRFYTGHEIKLSKITYFFLGSVLRLWVGFQVGMSIDPKLLVSNFQVITGTLGLLICELVFLLLVGNLLVFVFNIQAKLQQLQLQVQALVCIPSNVAVDQLAERISATGLSTNKLLDFVNLLIFFISLVSKELPLDCFV 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2827 194 Pfam E1-E2 ATPase 8 47 - -
Ssu7g2827 194 SUPERFAMILY Calcium ATPase, transduction domain A 7 47 IPR008250 -
Ssu7g2827 194 Gene3D - 68 85 - -
Ssu7g2827 194 Gene3D - 7 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2827 Ssu-Chr7 59104401 59105967 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2827 8 46 Primary Pumps ATPases AT3G42640 79.487 2.61e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2827 K01535 - gmx:100796279 65.0846