Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2824 ATGGGAACTCCCGAATTCCCAGATCTGGGAAAGCACTGTGCTGTCTCCGATTGCAAGCAGATCGATTTCCTACCCTTCACCTGCGACCGCTGCGACCAGGTGTATTGTTTGGAGCACAGAAGTTACATTAAACATCAGTGTACAAAAGCTGACAAGCTAGATGTCACTGTAGTTATATGTCCACTTTGTGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAACATAACTTGGGAGAATCATGTCAACACTGAGTGCGACCCATCAAATTATGAGAAAGTcacgaagaagaaaaaatgcCCTGTCCCTGGATGCAGAGAGATATTAGGATTCTCAAACACAATTAAGTGCAGGGACTGCACGGTAGACCATTGTTTAAAGCATCGGTTTGGACCTGATCACAAATGTCCTGGTCCCAAAAATGTGGaaacaagtttttcatttatGAGTCTCTTCAATGGGAGTAAAACAGAGGAGTCCAAACCCAAGTCAAGCTCAACCGCATCATCTAAATGGACTACAAGCTTTCTTAATGCGGCTTCTAACATTCGAGCTTCGGCTGAGGCTGGTGCGTCAAAGTTGAGTGGTGAAATTAACCAAGCATGGCAGACAGCAAAGGGTGGGGTGGGACAGAGCCGTAGCAGTGGTCAAGTGGAGCAATGCCCTCAGTGTGGCGCCAAGTTTTCCTCGGTTACTACTTTGGTGGACCATGTGCAAAAAGTTCATGAGAGGAGTGGCAACCGGTCTGGAGCAAAGGTTACAATCGATGTTTGTCCTAAGTGTAGCAGAGGATTTCGAGATCCTGTGTCCCTTGTGGAGCATGTTGAGAGGGATCATGGTGGCAGTTCTAGAGCGTAG 861 0.4553 MGTPEFPDLGKHCAVSDCKQIDFLPFTCDRCDQVYCLEHRSYIKHQCTKADKLDVTVVICPLCAKGVRLVPDQDPNITWENHVNTECDPSNYEKVTKKKKCPVPGCREILGFSNTIKCRDCTVDHCLKHRFGPDHKCPGPKNVETSFSFMSLFNGSKTEESKPKSSSTASSKWTTSFLNAASNIRASAEAGASKLSGEINQAWQTAKGGVGQSRSSGQVEQCPQCGAKFSSVTTLVDHVQKVHERSGNRSGAKVTIDVCPKCSRGFRDPVSLVEHVERDHGGSSRA 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2824 286 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Ssu7g2824 286 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Ssu7g2824 286 ProSitePatterns Zinc finger C2H2 type domain signature. 259 280 IPR013087 -
Ssu7g2824 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 248 IPR013087 -
Ssu7g2824 286 ProSitePatterns Zinc finger C2H2 type domain signature. 222 243 IPR013087 -
Ssu7g2824 286 SUPERFAMILY AN1-like Zinc finger 55 141 IPR035896 -
Ssu7g2824 286 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Ssu7g2824 286 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Ssu7g2824 286 Pfam C2H2-type zinc finger 221 243 - -
Ssu7g2824 286 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Ssu7g2824 286 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 285 IPR013087 -
Ssu7g2824 286 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Ssu7g2824 286 Gene3D - 2 57 IPR035896 -
Ssu7g2824 286 Gene3D - 86 172 IPR035896 -
Ssu7g2824 286 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 286 - -
Ssu7g2824 286 SUPERFAMILY beta-beta-alpha zinc fingers 221 276 IPR036236 -
Ssu7g2824 286 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 286 - -
Ssu7g2824 286 SMART c2h2final6 257 280 IPR013087 -
Ssu7g2824 286 SMART c2h2final6 220 243 IPR013087 -
Ssu7g2824 286 Gene3D Classic Zinc Finger 192 283 - -
Ssu7g2824 286 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2824 Ssu-Chr7 59015748 59017523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2824 1 286 C2H2 Transcription Factor Family AT2G41835 63.889 1.31e-129 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g2824 zf-AN1 4.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2824 - - gmx:100786272 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1480 4 24743250 24745024 Ssu7g2824 7 59015748 59017523 PCT