Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2821 ATGGGCAACTGCTGCGTCACGCCGTCGGGTCAGGGAGGGAATAAAAACCGGAAACAGAAGCAGAAGAAGCAGAAGGCGCACGGGGATGGGCCGGGGCGGAAGCTGGTGGTTTTGAAGGAGCCCACGGGGCGGGACATTGGGCTGCGGTACGAGCTGGGCCGGGAGCTGGGCCGGGGGGAGTTCGGGGTGACGTACCTGTGCCGGGACAGGGAGACGAAGGAGGAGATGGCGTGCAAAAGCATATCGAAGAAGAAGCTGCTAAACGCGATTGATATTGAGGACGTGAGGAGGGAGGTGGAGATCATGAGGCACCTGCCCAAACACCCCAACGTCGTGTCGTTCAGGGAGGCCTACGAAGACGACAATGCCGTTCACCTCGTCATGGAGCTCTGCGAGGGCGGTGAGCTCTTCGACCGCATCGTAGCCCGCGGCCACTACACCGAGCGCGCCGCCGCCGTCGTCACCAGAACCGTCGTCGAAGTCGTGCAGATGTGCCACAAACATGGTGTGATGCATCGAGATCTCAAACCTGAGAACTTTTTGTTTGGAGACAAGAAGGAAACAGCACCTCTGAAAGCTATTGACTTTGGATTGTCGGTTTTCTTTAAACCAGgtgaaaattttaatgagaTAGTTGGAAGTCCATATTACATGGCTCCAGAGGTATTAAAGCGTAATTATGGCCCTGAAGTAGATATCTGGAGTGCTGGAGTAATTCTTTACATCTTACTTTGTGGTGTCCCACCGTTTTGGGCAGAAACTGAACAGGGAGTTGCTCAAGCAATTATTCGATCTGCTGTTGATTTTAAAAGGGAGCCATGGCCAAAGGTTTCTGATAATGCAAAAGACCTTGTGAAGAAGATGCTTGATCGTGACCCAAAGAGCCGGCTTACTGCACAAGAAGTGttagATCATCCATGGTTACAGAATGCAAACAAAGCTCCTAATGTTTCATTGGGAGAAACTGTTAGAACAAGGCTCATGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTTTGAGGGTGATTGCAGAGCATTTGTCTGTAGAAGAAGTTGCTGGAATAAAAGAGGGATTCCAGGTGATGGATACAGGCAATAAAGGCAAGATTAACGTTGATGAGCTGCGAGAAGGGTTGCGTAAACTAGGTCACCAAATTCCTGATGGAGATGTCCAAATACTAATGGAAGCTGGTGATGTAGACAATGATGGGTACCTAGATTATGGAGAGTTTGTTGCCATTTCTATTCATCTGAGAAAGATAGGCAATGACGAGCACCTTCACAAAGCCTTCCAATTTTTTGATCAGAACCAAAGTGGGTACATTGAAATTGAGGAGTTACATAATGCCTTAGCCGATGAGATTGAAACAAACAATGAAGAAGTCATCAATGCAATTATGCATGATGTGGACACAGATAAGGATGGAAGAATAAGTTATCAGGAATTTGCTGCAATGATGAAGGCTGGCACAGACTGGAGGAAAGCATCAAGGCAGTATTCAAGGGAGAGGTTTACTAGTCTAAGTCAGAAATTGATGAAGGACGGGTCTTTGCAAATAAACAATGGTGGTAGATGA 1581 0.4712 MGNCCVTPSGQGGNKNRKQKQKKQKAHGDGPGRKLVVLKEPTGRDIGLRYELGRELGRGEFGVTYLCRDRETKEEMACKSISKKKLLNAIDIEDVRREVEIMRHLPKHPNVVSFREAYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAVVTRTVVEVVQMCHKHGVMHRDLKPENFLFGDKKETAPLKAIDFGLSVFFKPGENFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSAVDFKREPWPKVSDNAKDLVKKMLDRDPKSRLTAQEVLDHPWLQNANKAPNVSLGETVRTRLMQFSVMNKLKKRALRVIAEHLSVEEVAGIKEGFQVMDTGNKGKINVDELREGLRKLGHQIPDGDVQILMEAGDVDNDGYLDYGEFVAISIHLRKIGNDEHLHKAFQFFDQNQSGYIEIEELHNALADEIETNNEEVINAIMHDVDTDKDGRISYQEFAAMMKAGTDWRKASRQYSRERFTSLSQKLMKDGSLQINNGGR 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2821 526 ProSitePatterns Protein kinases ATP-binding region signature. 56 79 IPR017441 GO:0005524
Ssu7g2821 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Ssu7g2821 526 SMART efh_1 427 455 IPR002048 GO:0005509
Ssu7g2821 526 SMART efh_1 391 419 IPR002048 GO:0005509
Ssu7g2821 526 SMART efh_1 355 383 IPR002048 GO:0005509
Ssu7g2821 526 SMART efh_1 463 491 IPR002048 GO:0005509
Ssu7g2821 526 Pfam Protein kinase domain 50 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2821 526 SMART serkin_6 50 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2821 526 Gene3D Phosphorylase Kinase; domain 1 52 135 - -
Ssu7g2821 526 MobiDBLite consensus disorder prediction 1 15 - -
Ssu7g2821 526 SUPERFAMILY Protein kinase-like (PK-like) 49 321 IPR011009 -
Ssu7g2821 526 CDD EFh 427 489 IPR002048 GO:0005509
Ssu7g2821 526 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
Ssu7g2821 526 PANTHER SERINE/THREONINE-PROTEIN KINASE 14 505 - -
Ssu7g2821 526 Gene3D - 317 491 - -
Ssu7g2821 526 Gene3D Transferase(Phosphotransferase) domain 1 136 316 - -
Ssu7g2821 526 CDD STKc_CAMK 49 307 - -
Ssu7g2821 526 ProSiteProfiles Protein kinase domain profile. 50 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2821 526 ProSitePatterns EF-hand calcium-binding domain. 472 484 IPR018247 -
Ssu7g2821 526 ProSiteProfiles EF-hand calcium-binding domain profile. 459 494 IPR002048 GO:0005509
Ssu7g2821 526 ProSiteProfiles EF-hand calcium-binding domain profile. 351 386 IPR002048 GO:0005509
Ssu7g2821 526 Pfam EF-hand domain pair 426 489 IPR002048 GO:0005509
Ssu7g2821 526 Pfam EF-hand domain pair 368 414 IPR002048 GO:0005509
Ssu7g2821 526 ProSitePatterns EF-hand calcium-binding domain. 400 412 IPR018247 -
Ssu7g2821 526 SUPERFAMILY EF-hand 337 512 IPR011992 -
Ssu7g2821 526 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 14 505 - -
Ssu7g2821 526 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Ssu7g2821 526 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2821 Ssu-Chr7 58935265 58940376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2821 1 521 EF-hand Containing Proteins AT5G19450 75.992 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu7g2821 Pkinase 4.4e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2821 K13412 - gmx:100778471 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1476 4 24660726 24664426 Ssu7g2821 7 58935265 58940376 PCT