Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2820 atgcctaagtcacATATTGTTGGTGCCTGGACTTCATCAAGTCCTCGTGCGAGTCCACTAGCTCCCCTGTTGCATGTGTTCAAAGCCTTTCAAGGTATGCCAGCACAATTCGCCAAAGCTGAGCGACTACTAGCCATCACGGCCCTATACGTGAGCGTGTCTAGAACGCGATCATGCGCATCGTTTGTGAAGGTAATGGGCTCGGCGAAGGGGATGAAGCCCATAGAGCATAATGTGGTGCAAGACTGCATAGAGCTCATGGATGACAGCGTGGATCGTCTCAGCCAATCAATTAGGGAGCTTGGCCTTTTAGGTAAGGCTGAGGGGAAGGATTTTGCGTGGCACATGAGTAATGTCCAGACTTGGGTTAGTGCTGCCATGACCAATCAGAAAACGTGTCTTGACGAGGTTGATGGGCCCCATGTGGATGCGAACTTGAAGGATGCCATTAGGCCCAGAGTTGTGGACGTTTCTCAAGTCACTAGTAATGCCCTTGCATTGGTTAATCGCTTTGCCTCCAAGAACCGTACTATCGCACAAACTAAAATGCCATAA 555 0.4865 MPKSHIVGAWTSSSPRASPLAPLLHVFKAFQGMPAQFAKAERLLAITALYVSVSRTRSCASFVKVMGSAKGMKPIEHNVVQDCIELMDDSVDRLSQSIRELGLLGKAEGKDFAWHMSNVQTWVSAAMTNQKTCLDEVDGPHVDANLKDAIRPRVVDVSQVTSNALALVNRFASKNRTIAQTKMP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2820 184 PANTHER PECTINESTERASE INHIBITOR 9 36 175 - -
Ssu7g2820 184 Pfam Plant invertase/pectin methylesterase inhibitor 39 167 IPR006501 GO:0004857
Ssu7g2820 184 PANTHER PECTINESTERASE INHIBITOR-LIKE 36 175 - -
Ssu7g2820 184 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 172 IPR035513 -
Ssu7g2820 184 CDD PMEI-like_3 44 173 - -
Ssu7g2820 184 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 171 IPR035513 -
Ssu7g2820 184 SMART PMEI_2 2 167 IPR006501 GO:0004857
Ssu7g2820 184 TIGRFAM PME_inhib: pectinesterase inhibitor domain 44 169 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2820 Ssu-Chr7 58897343 58899505 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2820 64 168 Carbohydrate Esterase AT3G14310 31.429 3.94e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2820 - - gmx:100789460 209.92