Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2806 ATGATACTGGAAAAGAGGAAATTTCTGAAGATGAATGTGAAAAGCATAGTACTCCTAGATATTCCACTGAGATTCCGTAAACGTGAAACACAATGCAAACCCCAAGCAAGCCCAGTATTTCTGTGTAATCAGTTAAGACGAAAGAAAATTCCATGGACAGCTGAGGAGGAAGAGCTGATAAGgGAGGGAGTGCAGAAGTTTGGTTTCAATGACccaaagaaatggaaaaaaattttgGCATTTGGTTCTCATGTGTTTGAGACGGTTGGTAAGCGTCGTACACCTCAAGACCTGAAGGATAAATGGAAGAACATGTGCAAAGCTCACTCAAAGTCAAAATGA 342 0.383 MILEKRKFLKMNVKSIVLLDIPLRFRKRETQCKPQASPVFLCNQLRRKKIPWTAEEEELIREGVQKFGFNDPKKWKKILAFGSHVFETVGKRRTPQDLKDKWKNMCKAHSKSK 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2806 113 Pfam Myb-like DNA-binding domain 51 105 IPR001005 -
Ssu7g2806 113 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 110 IPR017930 -
Ssu7g2806 113 SMART sant 48 108 IPR001005 -
Ssu7g2806 113 CDD SANT_TRF 50 107 - -
Ssu7g2806 113 ProSiteProfiles Myb-like domain profile. 44 106 IPR001005 -
Ssu7g2806 113 Gene3D - 43 109 - -
Ssu7g2806 113 SUPERFAMILY Homeodomain-like 46 107 IPR009057 -
Ssu7g2806 113 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 28 109 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2806 49 106 Single Myb Histone (SMH) Gene Family AT3G49850 43.103 1.11e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu7g2806 Myb_DNA-binding 3.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2806 - - var:108326175 164.466