Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2805 ATGGAAGGTTACAAAAAGTCTCCACTAAAGCCTTGGAAGAAAGGGCCAACCAGGGGCAAAGGGGGTCCCCAAAATGCCTCATGTGAGTATAGAGGTGTTAGACAAAGAACATGGGGCAAATGGGTGGCTGAGATAAGAGAGCCAAAGAAGAGAACCAGACTCTGGCTTGGCTCTTTTGCCACAGCAGAAGAAGCTGCCTTGGCCTATGACGAGGCTGCAAGGAGACTCTATGGTCCTGATGCTTACCTTAACCTTCCCCACATGCAACCAAGCTTCACCAGTTCCACTTCCAAATCTCAAAAGTTCAAATGGTTCCCTTCCAAGAACTTCATTTCCATGTTTCCCTCACGTGGATTGCTCAATCTCAATGCCCAACCGAGTGTCCATGTGATCCATCAGAGGCTGCAACAGTTTAAGCAAAATGGGGTGGTTGCAAGTCAATCACCACATTCTAGTTCATCAAAGGTAGAAGAACTTGATAACCTAGGCAGCCAAAATCATGCAGAAATTCTTCCTCCACTTCAACAAGATGCTCAAATTTCTTCACAGAAAACAATTGGTGATTTTGAGGAGAAACCACAGATAGACCTACTTGAGTTTCTTCAACAGATGGGAATACTAAATGAAGAAAGAGAGGCAGAGAAAACTGATAGCTCAGGAAGTTCAACAGTGTCTGAAGCTGCATCAAGAGATGACAACGAACAACCAGGAGTGTTTTCTGACATGAGTGTTAACTGGGAGACATTGATTGAGATGCATGACATCGGAGCTGCAGATAATTATCATGCATCAGAAGACATCCAGTTTGAAGCATGTGACATAAACGAGGACCTTACTTTCTCCACTTCCATTTGGAACTACTACGAAAATTAG 873 0.4399 MEGYKKSPLKPWKKGPTRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAALAYDEAARRLYGPDAYLNLPHMQPSFTSSTSKSQKFKWFPSKNFISMFPSRGLLNLNAQPSVHVIHQRLQQFKQNGVVASQSPHSSSSKVEELDNLGSQNHAEILPPLQQDAQISSQKTIGDFEEKPQIDLLEFLQQMGILNEEREAEKTDSSGSSTVSEAASRDDNEQPGVFSDMSVNWETLIEMHDIGAADNYHASEDIQFEACDINEDLTFSTSIWNYYEN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2805 290 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Ssu7g2805 290 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Ssu7g2805 290 MobiDBLite consensus disorder prediction 210 239 - -
Ssu7g2805 290 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 284 - -
Ssu7g2805 290 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Ssu7g2805 290 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Ssu7g2805 290 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Ssu7g2805 290 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Ssu7g2805 290 MobiDBLite consensus disorder prediction 218 239 - -
Ssu7g2805 290 MobiDBLite consensus disorder prediction 1 28 - -
Ssu7g2805 290 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Ssu7g2805 290 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Ssu7g2805 290 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2805 Ssu-Chr7 58399796 58400668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2805 5 288 AP2-EREBP Transcription Factor Family AT3G57600 52.083 4.35e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g2805 AP2 2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2805 - - gmx:100808363 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1467 4 24423913 24430126 Ssu7g2805 7 58399796 58400668 PCT