Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2797 ATGGCAGACCCTTACTCTAATTTCTTCGCACCAGGTTTCCTCCACTACCCATCTTCAAACCCTTCACCCCACCACCATCCTTATGTTCACAACTTCATCAACCAAGCCACCACCAGTGGCAACAGCAACATCAACCACAGCACCTTTTTCCACTTCCATCACCACCAGCACCACTTTCAAACCGCCATAActtcttgttcttgttcttcttcttcttcacccCCTTCCCCTCCCTTGAGAGAAGCCCTTCCACTTCTGAGTCTCAGCCCAACAAAGCAAGAGGATGAAGAGGAACAAGAAGAGGAGGATCAGGATCAGTACTTTTGCACTGCCATGGATGTGGAAGAGGACTGTAACAGGAGTGCCCTCCACCCCAAAGAGGAAGAGCAAGAAGAGGATGGTGACAGTGTCACTGTTGCACTGCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATAGCTTCTGTGCTGTCTTCAGCTTGTTCCACAGATAAAGAACAACAacaaggaggaggaggagatggtaataataataatgggagTGAGGATTCTTCTTCTGGGTTCTTGTCCAACAGGCTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAGATTCTCATTGGTCCTACACAATTCTCTTGTCCTGTTTGTTGCAAAACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGTATGCTTAGGCTTCCATGCTATTGCTGTTCCCCAGGTTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCCCTCAAAGATTTCAGAACCCTTCAAACACACTACAAGAGGAAGCATGGGATTAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCTGTGAGGGGGGATTGGAGAACCCATGAAAAGAACTGTGGGAAGCTTTGGTATTGCATCTGTGGCTCTGATTTCAAGCACAAGAGGTCGCTTAAAGATCATATCAAAGCTTTTGGGAGTGGCCATGCAGCTTATGGGATCGATGgctttgaagaagaagaagagcctGCATCTGAAGTAGAACAAGACAATGACTTCACCCAGTAA 1125 0.44 MADPYSNFFAPGFLHYPSSNPSPHHHPYVHNFINQATTSGNSNINHSTFFHFHHHQHHFQTAITSCSCSSSSSPPSPPLREALPLLSLSPTKQEDEEEQEEEDQDQYFCTAMDVEEDCNRSALHPKEEEQEEDGDSVTVALHIGLPSPSAAEIASVLSSACSTDKEQQQGGGGDGNNNNGSEDSSSGFLSNRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCSPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEEEPASEVEQDNDFTQ 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2797 374 SUPERFAMILY beta-beta-alpha zinc fingers 279 317 IPR036236 -
Ssu7g2797 374 Gene3D Classic Zinc Finger 275 351 - -
Ssu7g2797 374 MobiDBLite consensus disorder prediction 159 188 - -
Ssu7g2797 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 297 317 IPR013087 -
Ssu7g2797 374 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 49 371 - -
Ssu7g2797 374 PANTHER ZINC FINGER PROTEIN WIP2 49 371 IPR043584 GO:0003700|GO:0010468
Ssu7g2797 374 SMART c2h2final6 213 235 IPR013087 -
Ssu7g2797 374 SMART c2h2final6 297 317 IPR013087 -
Ssu7g2797 374 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 240 IPR013087 -
Ssu7g2797 374 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Ssu7g2797 374 Gene3D Classic Zinc Finger 212 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2797 Ssu-Chr7 58164444 58166846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2797 1 371 C2H2 Transcription Factor Family AT3G57670 61.990 9.26e-147 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu7g2797 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2797 7 58164444 58166846 Ssu7g2797 7 58164444 58166846 ECH
Ssu7g2797 7 58164444 58166846 Ssu8g0409 8 6581388 6583438 ECH
Ssu7g2797 7 58164444 58166846 Ssu3g2697 3 80800557 80802761 ECH
Ssu4g1459 4 24286667 24289027 Ssu7g2797 7 58164444 58166846 PCT