Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2792 ATGGAGAGTAGTGGCAAGATGGAAGACTATGAAGTGATTCAGCAAATTGGAAGAGGAGCACTTGGTGCAACTTTTCTTGTTCTACACAAGATTGAGAAAAAGAGGTATGTGCTGAAGAAAATTCGCTTGGCCAAACAAGCAGACAAGTCCAAAGTGACAGCACAACAAGAGATGGACCTGATTGCAAAACTAAATTACCGTTATATTGTGGAGTACAAAGATGCTTGGGTGGAGAAGGAGGACTACATATGCATTATAACTGGCTATTGTGAAGGAGGTGACATGGCTGCGAATATAAAGAAAGCTCGGGGATCTTATTTTTCGGAGGAGAAAGTCTGCAAATGGTTGACCCAGTTGTTACTAGCTGTGGACTACCTTCACTCCAATCGGGTACTCCACAGAGATCTTAAGtGTTCCAACATATTCCTTACCAAAGAAAATAACATTCGGCTAGGTGAATTTGGTCTTGCAAAGCTTCTTAATGAAGACCTTGCTTCCCCGGCTGTTGGAACTCTAAAGTACATGTGTCCTGAGGCCATTGCTGGTATGGCTTATGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAACCAGCATTTCGTGCTCCAGAAAGGGCAGGacttatcaataaaataaatcgATCCTCCATTTCTCCACTGCCAATTGTCTACTCGTCCACACTGAAACAACTTATCAAGAGCATGCTGAGGAAAAACCCAGAACATAGACCAACAGCATCTGAATTATTAAGGCATCCTCATTTACAACCTTTTGTTCTTCGCTGTCGTAATGCATCATCTATTTTTCTACCAGTACATCTTATAAGTAGTAACTCAaaggataaaacaaaaaacaaatctaGTGGTGGCAAAGACCATTGGGACAAGGAGCCAGAATTAGCGGGATTAGTAAATCGTTTGGAACGAATTTATCCGATTGAGGGAAATGTAGGTGTACAGACTCGGAACCGGCCTAATGATGTCAAGCTAGCAGTGTCAACCAGTGCGCAAGACAACCTTGAGACTAAAATGGTTGATTCTACCAGCTACACTCTGGAATTTTCTACTAGTATTAGTGGCTCAAAAGACGGCTCAACAACATCTGAATCAACTGTTTGCAGTGTGTGCAAGGAAGGagactttaaaaataaacttgcaAGGGACATGGTTGACAGTGAGATCACTTCAAAGAGTACACTAGATTCTGTGCTTGAAGAACAAGGATTTGCTGCTCACAAGTCATATGCAATTGACATAAATGCAGAGATTAATAAAGTTGAAGATACTTTTTCTAATGAAGATTTCAATACAGATGAAGCACTGAGCGAAGGTGCCAAACCTGAGGACTACGGTAAATCAATAATGTCCAGTGAAGACAGCAATAGTAATGATAAAGACgagtccattgatgagatcacaTCAAAGAGTACACTACATTCTCTGCATGAAGAACAAGGATTTACAGATGAACATTTTCAGAAGTCAGATGTGATTGACACAAATGCAGTGGCTACAAAAGTTGAAGATAATTTTTCCAATGAACGTTTTGACAAAACTGAAGCAGAGAGGGAAAATGCCAAATCCGAGTACTCTGGAAAATCATTAGAGTCCAGTGAAAACAGCATCGGTAATGATAACAATGGGTTCATTGATGAGATCACATCAAATTCTGTGCATGAAGAACGAGGATTTACAGCGGAACATTTTCAGAAGTCAGATGTGATTGACACAAATGCAGTGGCTACAAAAGTTGAAGATAATTTTTCCAATGAAGGTTTTGATAAAACTGAAGCAAAGAGGGAAAATGCTGAACCTCAGGACTCCAGAAAATTAGTAGTATCCAGTGAAAACAGTGATGGTAATGATAAAGatgtgtccattgatgagattgcatcaaagaatacGCTAGATTCTGTGCATGAAGAGCAAGGCTTTGCAGCTGAACATGTTCAAAAGTCAGATGTTGTAGACATAAATGCAGCGGCTTCAAAAGCTGAAGATGAATTTTCTAATGAAGGCTTTGATAAAGCTGAAGCACAGAGGAAAGATGTCAAACCTGAGAGCTCCAGTAAATCAATAATTTCCTGTGAAAACAGCAATGATAATGATGAAGATGGATCTGGTGTTGCGAGTATGCTAGATTCTGTAGGTGAAGAGCAAGGACTTGCTGCTGAACATTTTCAGAAGTCTGATGCTATTGACATAAATACAGTGACTACAGTAGTTGAAGGTAAAGTTTCCAATGAAGGTTTTGATAAAGCTGAAACACAGGAGAAAGATGCTAAACCTGAGGCCTCCGGTAAATCGATGTCCAGTGAAGACAGCAACAGCAATGATAAAGATGGGTCCATCGATGAGGAAAGGCCATCAGCAATAGCACATCCTGTTAAGTTTGAACAAGAAATTGAACCTGGAAGCTGCTTGAAGGAAAATGAAAACCCTGAAGCATTTACAGAAGGCTCACACATGGACAGCTTGACTTCTGAGAGTAACAATACGCATCTAGGTAAGGATGAAGGCGGTGAAAACACAGTCACAATCAGTTCGATGCAAGATGACAATGCTGTCATGGTCAATAAGCCACCAAATGGCATTTCATTAAGGAAACGTACATCAAGAGGCAGTGATAATAGCTGCCAGCAAAGAGCTGATGCTCTGGAATCTCTGCTCGAGTTATGTGCGCAGCTACTTCAGCAAGGAAAGCTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCTGTATCTGTATCGTCCAGAGAAACAGCAATATGGCTTACAAAAAGCCTCGTGGCCTCGCAAAAACTAAATCCTGAGACATAG 2853 0.3929 MESSGKMEDYEVIQQIGRGALGATFLVLHKIEKKRYVLKKIRLAKQADKSKVTAQQEMDLIAKLNYRYIVEYKDAWVEKEDYICIITGYCEGGDMAANIKKARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKENNIRLGEFGLAKLLNEDLASPAVGTLKYMCPEAIAGMAYGYKSDMWSLGCCMFEIVAHQPAFRAPERAGLINKINRSSISPLPIVYSSTLKQLIKSMLRKNPEHRPTASELLRHPHLQPFVLRCRNASSIFLPVHLISSNSKDKTKNKSSGGKDHWDKEPELAGLVNRLERIYPIEGNVGVQTRNRPNDVKLAVSTSAQDNLETKMVDSTSYTLEFSTSISGSKDGSTTSESTVCSVCKEGDFKNKLARDMVDSEITSKSTLDSVLEEQGFAAHKSYAIDINAEINKVEDTFSNEDFNTDEALSEGAKPEDYGKSIMSSEDSNSNDKDESIDEITSKSTLHSLHEEQGFTDEHFQKSDVIDTNAVATKVEDNFSNERFDKTEAERENAKSEYSGKSLESSENSIGNDNNGFIDEITSNSVHEERGFTAEHFQKSDVIDTNAVATKVEDNFSNEGFDKTEAKRENAEPQDSRKLVVSSENSDGNDKDVSIDEIASKNTLDSVHEEQGFAAEHVQKSDVVDINAAASKAEDEFSNEGFDKAEAQRKDVKPESSSKSIISCENSNDNDEDGSGVASMLDSVGEEQGLAAEHFQKSDAIDINTVTTVVEGKVSNEGFDKAETQEKDAKPEASGKSMSSEDSNSNDKDGSIDEERPSAIAHPVKFEQEIEPGSCLKENENPEAFTEGSHMDSLTSESNNTHLGKDEGGENTVTISSMQDDNAVMVNKPPNGISLRKRTSRGSDNSCQQRADALESLLELCAQLLQQGKLEELAAVLRPFGEDAVSVSSRETAIWLTKSLVASQKLNPET 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2792 950 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 506 586 - -
Ssu7g2792 950 MobiDBLite consensus disorder prediction 596 615 - -
Ssu7g2792 950 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 798 936 - -
Ssu7g2792 950 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 583 666 - -
Ssu7g2792 950 MobiDBLite consensus disorder prediction 756 775 - -
Ssu7g2792 950 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Ssu7g2792 950 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 506 586 - -
Ssu7g2792 950 Pfam Protein kinase domain 10 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2792 950 MobiDBLite consensus disorder prediction 697 714 - -
Ssu7g2792 950 MobiDBLite consensus disorder prediction 443 477 - -
Ssu7g2792 950 Gene3D Transferase(Phosphotransferase) domain 1 90 274 - -
Ssu7g2792 950 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 664 742 - -
Ssu7g2792 950 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 4 509 - -
Ssu7g2792 950 SUPERFAMILY Protein kinase-like (PK-like) 7 289 IPR011009 -
Ssu7g2792 950 CDD STKc_Nek 9 263 - -
Ssu7g2792 950 MobiDBLite consensus disorder prediction 510 559 - -
Ssu7g2792 950 MobiDBLite consensus disorder prediction 292 306 - -
Ssu7g2792 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Ssu7g2792 950 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 583 666 - -
Ssu7g2792 950 MobiDBLite consensus disorder prediction 518 538 - -
Ssu7g2792 950 MobiDBLite consensus disorder prediction 753 887 - -
Ssu7g2792 950 SMART serkin_6 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2792 950 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 719 794 - -
Ssu7g2792 950 MobiDBLite consensus disorder prediction 873 887 - -
Ssu7g2792 950 MobiDBLite consensus disorder prediction 629 656 - -
Ssu7g2792 950 MobiDBLite consensus disorder prediction 287 306 - -
Ssu7g2792 950 MobiDBLite consensus disorder prediction 782 802 - -
Ssu7g2792 950 MobiDBLite consensus disorder prediction 593 734 - -
Ssu7g2792 950 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 719 794 - -
Ssu7g2792 950 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 664 742 - -
Ssu7g2792 950 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 4 509 - -
Ssu7g2792 950 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 798 936 - -
Ssu7g2792 950 ProSiteProfiles Protein kinase domain profile. 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2792 950 MobiDBLite consensus disorder prediction 539 559 - -
Ssu7g2792 950 MobiDBLite consensus disorder prediction 826 864 - -
Ssu7g2792 950 MobiDBLite consensus disorder prediction 676 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2792 Ssu-Chr7 58038737 58047197 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2792 10 264 MAP Kinase Kinase Kinase AT3G13530 32.171 4.96e-32 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Ssu7g2792 Pkinase 1.6e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2792 K08857 - gmx:100818558 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1457 4 24244934 24250372 Ssu7g2792 7 58038737 58047197 PCT