Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2789 ATGGAGTCTCACGATGAAACAGGATGCCAGGCTCCGGAACGTCCCATACTTTGCATTAACAATTGTGGCTTCTTGGGAAGGGCTGCCACCATGAATATGTGTTCCAAATGTTACAAAGACATGCTGTTGAAGCAGGAACAGGACAAACTTGCGGCAGCATCGGTTGAAAACATTGTGAATGGAGGTTCTGGCTGCAAACAGGCTGTGACTGCAGGTTCTGTGGATATACAAGTTGGAAATGTGGAGGTCAAGGTGGTCTGTGCTGAGATTTCTGGGGATTCATCCTCTGGTGAGAATTTGGAGATGAAAGCTAAGACAGGTCCCAGCAGATGTGCTACTTGCCGAAAGCGTGTTGGATTAACTGGTTTCAGCTGCAAATGTGGGAACCTCTTTTGTGCAATGCACCGCTATTCAGACAAACACGATTGCCCCTTTGATTATCAGACGGTTGGTCGGGATGCTATAGCTAAAGCCAACCCTATAATTAAGGCTGATAAGCTCGACAAAATCTAG 513 0.4659 MESHDETGCQAPERPILCINNCGFLGRAATMNMCSKCYKDMLLKQEQDKLAAASVENIVNGGSGCKQAVTAGSVDIQVGNVEVKVVCAEISGDSSSGENLEMKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYQTVGRDAIAKANPIIKADKLDKI 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2789 170 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Ssu7g2789 170 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Ssu7g2789 170 Gene3D - 88 166 IPR035896 -
Ssu7g2789 170 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 2 170 - -
Ssu7g2789 170 SMART AN1_Zf_4 111 148 IPR000058 GO:0008270
Ssu7g2789 170 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Ssu7g2789 170 SUPERFAMILY AN1-like Zinc finger 102 165 IPR035896 -
Ssu7g2789 170 ProSiteProfiles Zinc finger AN1-type profile. 105 151 IPR000058 GO:0008270
Ssu7g2789 170 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Ssu7g2789 170 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 170 - -
Ssu7g2789 170 Pfam AN1-like Zinc finger 111 148 IPR000058 GO:0008270
Ssu7g2789 170 Gene3D - 1 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2789 Ssu-Chr7 57942977 57943489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2789 5 170 C2H2 Transcription Factor Family AT3G52800 44.379 2.15e-40 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2789 - - gmx:100499995 306.605