Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2783 ATGTCTCCTCCTGTTCTCCCTGAGGAACTCTTCGTGGAAATTTTGTCATGGGTTCCGGTGAAGGCTCTCATGCGATTCAGGTGCGTTTCCAAGTGGTGGAACTCCCTCGTCTTCGATCCTACATTCGTTAAACTGCATCTACAAAGGACTTCCAAAAACACCCAGGTCCTATTAACGTTCGACAACTATGAAAGCAAGTATTGTGCACCCTGCTCCATACATGGTTTACTCGAGAACCCATCATCCACTATTTATGGTTGCCACCCATTCAAGCACGGTTACAGACTCTTGGGCGTCTGCAATGGGCTAGTTTGCTTACTAGATTCTTACCGAGGAAATGGATTTGTAGGATACTGTGTCCGATTTTGGAACCCAGCCACAAGGGTCATATCCGAAGATTCACCGCACACACAGAATAATGATGGACCCTTCTCAATTTGGTGGCTTAGAGTGGTTCTTGATGAAGCACGTACTATAAAATCTTCTAAAAGCCAAATTTCTGCAGCAGCTGCTGCTCTAATTGCTGACAGATGTTGGTGTCTAACAGGCACTCTATCCAGGTTGCATAATGTGGTGTCCACGTGTAACCTATTTACCTTTGGCCTAGTTGCAGAAATTGTTGGCAAGGGATCCACATCTCAGAAATAG 648 0.4537 MSPPVLPEELFVEILSWVPVKALMRFRCVSKWWNSLVFDPTFVKLHLQRTSKNTQVLLTFDNYESKYCAPCSIHGLLENPSSTIYGCHPFKHGYRLLGVCNGLVCLLDSYRGNGFVGYCVRFWNPATRVISEDSPHTQNNDGPFSIWWLRVVLDEARTIKSSKSQISAAAAALIADRCWCLTGTLSRLHNVVSTCNLFTFGLVAEIVGKGSTSQK 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2783 215 ProSiteProfiles F-box domain profile. 1 45 IPR001810 GO:0005515
Ssu7g2783 215 Gene3D - 4 74 - -
Ssu7g2783 215 SMART fbox_2 6 46 IPR001810 GO:0005515
Ssu7g2783 215 PANTHER CYCLIN-LIKE F-BOX, F-BOX PROTEIN INTERACTION DOMAIN 4 143 - -
Ssu7g2783 215 Gene3D - 127 202 IPR038718 -
Ssu7g2783 215 PANTHER OS02G0783600 PROTEIN 4 143 - -
Ssu7g2783 215 Pfam F-box-like 5 40 IPR001810 GO:0005515
Ssu7g2783 215 Pfam SNF2-related domain 145 184 IPR000330 GO:0005524|GO:0140658
Ssu7g2783 215 SUPERFAMILY F-box domain 5 96 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2783 Ssu-Chr7 57803055 57806524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2783 136 184 RAD5 or RAD16-like Gene Family AT5G22750 63.265 1.63e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu7g2783 SNF2_N 1.6e-08 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2783 - - vun:114184511 194.126