Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2775 ATGGAGCAAGCCACGCTCGAAGCCATTCACTTCAACGAGGAAATCCGAGGCATCATGGCTCCGGCGCCGGAAACCGCCAATTCCTTCACCGCGCTGCTCGAGCTCCCGCCGACGCAGGCCGTCGAGCTCCTCCACTCGCCGGAGCGCGCCGGAAAACCGCCGCGCCACAATCCGAAACCGTATCCGTTGACCTCCTTCGCCTCCGCCACCGGCGCCGGGGCCGGAAACCTGACCTTCCCTTCCAACGCCTCGCTGATCGAACGCGCCGCCAGGTTCTCCGTCTTCGCCGGCGAGAACTCGCCGGAGGTGAAGCGCGAGCTGCCGGAGACCGATTCCAACCCGAGTTCGACTCAGGGCGGCGGCTCCGTCTCCGATCTCGCCGTGGAGAACGAGATCACGAAGAGCGCGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGCGTCGTCGAAGAAGTGCAAGAGCGTCGCCGACGAGAGTTCCGGCGACGGCGAGAAGCTTCCGTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCCACTGATAACCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCGGGTTGCAGCAAGGTATCAGGAACGGCATTGGTTCTGGATAAAATCATCAACCACGTGCAATCTCTACAACATGAAGTGGAGATATTATCAATGAAACTGGCAGCAGTTAACCCAGTAATTGATTTCAACCTTGACAGCTTATTGGCTACCGAaGGAGTGTCTCTAATGGACTGCAACTTCCCTCCCACAGTTGCACCCGTCACATGGCCAGAAATCCCACAGAATGGAAACAGACAACAATATCAGCAACCGTGGCAATTTGATGCATTCCACCAACCCCTGTGGGGGAGGGAAGAAGACAACACTAATTTCATGACTCCAGAAAACTCACTCTTGAGTTATGACTCATCGGCAAACTCAGGTAGATCAGGGTTAAGCTTCTATGCACGTCTCCTCCCAAAAGACACATTCCACAGAAATTTGTCTAATTTAATCTCATCATGA 1059 0.5439 MEQATLEAIHFNEEIRGIMAPAPETANSFTALLELPPTQAVELLHSPERAGKPPRHNPKPYPLTSFASATGAGAGNLTFPSNASLIERAARFSVFAGENSPEVKRELPETDSNPSSTQGGGSVSDLAVENEITKSAKRKEREKKVKASSKKCKSVADESSGDGEKLPYVHVRVRRGQATDNHSLAERARREKINARMKLLQELVPGCSKVSGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIDFNLDSLLATEGVSLMDCNFPPTVAPVTWPEIPQNGNRQQYQQPWQFDAFHQPLWGREEDNTNFMTPENSLLSYDSSANSGRSGLSFYARLLPKDTFHRNLSNLISS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2775 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983
Ssu7g2775 352 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983
Ssu7g2775 352 SMART finulus 183 233 IPR011598 GO:0046983
Ssu7g2775 352 MobiDBLite consensus disorder prediction 97 163 - -
Ssu7g2775 352 Gene3D - 174 245 IPR036638 GO:0046983
Ssu7g2775 352 MobiDBLite consensus disorder prediction 110 124 - -
Ssu7g2775 352 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 326 - -
Ssu7g2775 352 MobiDBLite consensus disorder prediction 147 163 - -
Ssu7g2775 352 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 326 IPR024097 GO:0006355
Ssu7g2775 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 246 IPR036638 GO:0046983
Ssu7g2775 352 CDD bHLH_AtBPE_like 167 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2775 Ssu-Chr7 57694030 57698771 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2775 6 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 50.992 2.87e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g2775 HLH 4.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2775 - - gmx:100799133 533.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1447 4 24074552 24084088 Ssu7g2775 7 57694030 57698771 PCT