Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2771 ATGGATTCCCATACCCATCATCATCAGGGTTATCAACTCCAACAACAACCACCCTCTTCTGGGTTGCTTCGTTTTCGCTCTGCACCGAGTTCACTTCTTTCAAATCTCGCACCTTCTTTTGTGAGTTACAGCGGTGGTGGTGACGGCGGCGACGACGGTATTGCGGTCGCTTCTAGTAGTTTCCAAGAGTTGGAAGGAAACAACAACAAGGGTTGTGCTAAGGCTTTGAGTTCTATGAATTCGCATAAGGGGTATGGTGGGGGACTGCCACCTCACTATCCGAGGCATGGTTCCTCTGCTGTTACTTTGAGTAGTTCTGCTATGGAGGGGTCTTATGGGTTGGTAGGTTCAATGGGGATGGATCATGAAGCGCCCCACAAGGGATTTGGGTCTAGTCTTCTCAGGCAGAGTAGCTCCCCTGCTGGACTTTTCTCTAACAACAACATTTCCTTTCAAAATGGGTTTGCTACCATGAAAGGTGTTGGAAACTATGGTGGGGTGAATGGCAGTAACGGTGAGCTTAGTCCATGTATCAACAGATTGAAGAATCAGTTTAGCTTCTCATCAAGAAATGCTTCTTCCCTGGGAATGTTGTCACAGATATCCGAAATAGGGAGTGAAGACATTGAGGCAACTAGTCCTGATGATGATAGGAGGCATGGAGGTAGTGGAACTGGTGATACTCAACATTATGACCCTGGATTCCCCTATGGTTCTTGGAATGATACTCCACAACTCTCAGAAAATCTCAGTGGCTTGAAAAGAGGGAGAAGTGGCAATGAAAAGATATTTTCTGATGTTCAGAATGGAGAGCTAGGAAGCCAAGTTAATTTATTATCACACCACTTGAGTTTACCAAAAACTTCAGCAGAGATGATTACCATGGAGAAGTTGTTTCAGTTCCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGCTGCGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAgtgaaagaatgagaaaattGCAAGAGCTTGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTAAGTGAAAAAAGGGCAAACTGCAAGTGTATAAGCATGCAAAAGGCAGATACAAGTCAAATTGCTTGA 1182 0.4408 MDSHTHHHQGYQLQQQPPSSGLLRFRSAPSSLLSNLAPSFVSYSGGGDGGDDGIAVASSSFQELEGNNNKGCAKALSSMNSHKGYGGGLPPHYPRHGSSAVTLSSSAMEGSYGLVGSMGMDHEAPHKGFGSSLLRQSSSPAGLFSNNNISFQNGFATMKGVGNYGGVNGSNGELSPCINRLKNQFSFSSRNASSLGMLSQISEIGSEDIEATSPDDDRRHGGSGTGDTQHYDPGFPYGSWNDTPQLSENLSGLKRGRSGNEKIFSDVQNGELGSQVNLLSHHLSLPKTSAEMITMEKLFQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSEKRANCKCISMQKADTSQIA 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2771 393 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 315 365 IPR011598 GO:0046983
Ssu7g2771 393 MobiDBLite consensus disorder prediction 1 25 - -
Ssu7g2771 393 MobiDBLite consensus disorder prediction 8 25 - -
Ssu7g2771 393 Gene3D - 316 388 IPR036638 GO:0046983
Ssu7g2771 393 Pfam Helix-loop-helix DNA-binding domain 320 366 IPR011598 GO:0046983
Ssu7g2771 393 SMART finulus 321 371 IPR011598 GO:0046983
Ssu7g2771 393 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 318 380 IPR036638 GO:0046983
Ssu7g2771 393 MobiDBLite consensus disorder prediction 211 225 - -
Ssu7g2771 393 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 15 385 - -
Ssu7g2771 393 MobiDBLite consensus disorder prediction 207 243 - -
Ssu7g2771 393 PANTHER TRANSCRIPTION FACTOR BHLH130 15 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2771 Ssu-Chr7 57418448 57421741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2771 1 371 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 46.036 7.31e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu7g2771 HLH 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2771 - - gmx:100819605 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2771 7 57418448 57421741 Ssu7g2771 7 57418448 57421741 ECH
Ssu7g2771 7 57418448 57421741 Ssu8g0401 8 6407954 6410087 ECH
Ssu7g2771 7 57418448 57421741 Ssu3g2709 3 81052174 81056012 ECH
Ssu4g1442 4 23982627 23984774 Ssu7g2771 7 57418448 57421741 PCT