Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2759 ATGAGTTCTGGCTCAGTCACCAAAGCACCACCCTCTTCCTCCTCATCACCCAACTCTTCCACTGAGTCCCTTGATGGGTTGAAGTTTGGCCAGAAAAtctattttgaggatgttagtGTTGCAGCAACAACTCAAGGGGCCAAAACAAGTGGTGGGGTTTCTTCTTCTGTTTCAAAGAAGGGAAGGGGTGGTTCAGTGCAAGCGGCTCAGCCTCCTAGGTGTCAGGTTGAGGGCTGCAAAGTAGATCTGAGTGGAGCTAAGGCTTACTATTCTAGGCATAAAGTTTGTGGCATGCACTCCAAGTCCCCTACTGTCATTGTAGCTGGTATTGAACAAAGGTTTTGCCAACAGTGTAGCAGATTTCACCTGCTTTCTGAATTTGATCAAGGAAAACGAAGCTGCCGCAGGCGACTTGCTGGCCATAATGAGCGCCGACGAAAGCCCCCACCTAGCTCCTTATTAACCTCTCGCTTTTCCAGACTTTCTTCACCTATTTTTGATAACAATGGCCGAGCTGGTGGCTTTATGATGGAATTTGCTTCATACCCAAAGCTTACTTTGAGAAATTCATTGCCAACTCCGGGATCAGCCGAGCTGGTTCCCGGGAACCATGCTGCATCACTTACCTGGCAGGAAGGCTCGGACAGACCATCTGAATTTTTCCTGCAAGGATCAGGGAGCAGTGGAACAGGCTTCCTTGGTCCCAAACATCCTTTAGTGGAAAGTTACACTGGAGTTGCCGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAGTCAAACATGGGGTTCCCGAAACACGGCTCCAAGCATTGAGCTGAACAACTTGTTGAATTTCAATGGGACACCAGTGACACAATTTGCTGCGCCGTCTTCTCAAGTTGCAGCCATGCATCAACTTCCAAATGCCACCTCATGGTACTTAAAGGGCATTGATTCAGGTAATTGTTCACCCGAGGCTGTCCCTGGTCTAGGTCTGGGTCAAATTTCGCTGCCGCTTCATAGCCATCATCATGGTGAGCTTGACGTGCCACAGCAGGGCAGGAGGCATTACATGGATCTAGGGGAGTCCAGGGCCTGTGAGTCTTCTCACTGGTCACTTTAA 1101 0.4859 MSSGSVTKAPPSSSSSPNSSTESLDGLKFGQKIYFEDVSVAATTQGAKTSGGVSSSVSKKGRGGSVQAAQPPRCQVEGCKVDLSGAKAYYSRHKVCGMHSKSPTVIVAGIEQRFCQQCSRFHLLSEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRFSRLSSPIFDNNGRAGGFMMEFASYPKLTLRNSLPTPGSAELVPGNHAASLTWQEGSDRPSEFFLQGSGSSGTGFLGPKHPLVESYTGVADSSCALSLLSSQTWGSRNTAPSIELNNLLNFNGTPVTQFAAPSSQVAAMHQLPNATSWYLKGIDSGNCSPEAVPGLGLGQISLPLHSHHHGELDVPQQGRRHYMDLGESRACESSHWSL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2759 366 MobiDBLite consensus disorder prediction 1 24 - -
Ssu7g2759 366 ProSiteProfiles Zinc finger SBP-type profile. 71 148 IPR004333 GO:0003677
Ssu7g2759 366 SUPERFAMILY SBT domain 72 153 IPR036893 GO:0003677|GO:0005634
Ssu7g2759 366 MobiDBLite consensus disorder prediction 44 71 - -
Ssu7g2759 366 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 366 IPR044817 GO:0003677
Ssu7g2759 366 Gene3D - 64 135 IPR036893 GO:0003677|GO:0005634
Ssu7g2759 366 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 1 366 - -
Ssu7g2759 366 Pfam SBP domain 74 147 IPR004333 GO:0003677
Ssu7g2759 366 MobiDBLite consensus disorder prediction 44 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2759 Ssu-Chr7 56759144 56764345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2759 27 366 SBP-box Gene Family AT2G42200 40.000 1.49e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu7g2759 SBP 4.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2759 - - gmx:100789301 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2759 7 56759144 56764345 Ssu7g2759 7 56759144 56764345 ECH
Ssu4g1422 4 23683263 23687242 Ssu7g2759 7 56759144 56764345 PCT