Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2758 ATGTATCATTCTTGGCAGGTGTCGAACGGAGCACATGGCAGTCTAGCCAAGGTTGGAGGCTCAGAAAAGCACAGCTTCAACTTCCACCAACAGCACGAGCAACATGTGTTTGATGTTCCCGTTTCGTGTTTGAAGTTCGATTCACAAAAACTGTTGTGTCAGTCTTCTGGGGACAACTCAACTCCGCAGTTCGGAAGTGTTGTTGATTCTTTCTTGTCCAGCGACGAAGACACGCTTTGTGACACATACAGTGAACTTCCTTGCCATGACGTGTCACTCTACAAGCATTTCAGATGCGAACATAACAGGTTGGAGGGAGATGATTCTGTCCCAGTTAAACAGGTTGAGGTTGTTTGTGCCACTTCTGGAAACCCTGCTTCTAGAGTGGTTCcaacaaggaaaaaaagaataaaatggaCCAAAGATTTGCATGAGCAATTCGTTGCGGCTGTCAATAGCCTTGGTGGTCctcaaaAAGCAATGCCCAAGGCAGTGCGGCAGAAGATGAATTCAAAGTCACTGACCATTTTTCATGTTAAAAGCCACTTGCAGAAATATCGGAACACAATGTACATGCAGAAAACTTCCAAGGAGGGATACGAAGAAAGCCTAGGCAGAGACATGGTGACTGAACTTCAACAGAAAATCGCTATGCAAATTGAGGAATCGCGACAACTGCAACTTGAGATTGGGAGGGGTATTCAAGAACAATTGGAGGTTCAACGAAATTTGCAAATGCTAGTcgaagaacaaaagaaacagGTCAATAGTGTTTTCGGCCAAAAGCAAACAAAGCAAATTGGAGGATCCAAATCTAGGGAGAATGACGGCAAAATGtttctgaaaaataaatag 855 0.414 MYHSWQVSNGAHGSLAKVGGSEKHSFNFHQQHEQHVFDVPVSCLKFDSQKLLCQSSGDNSTPQFGSVVDSFLSSDEDTLCDTYSELPCHDVSLYKHFRCEHNRLEGDDSVPVKQVEVVCATSGNPASRVVPTRKKRIKWTKDLHEQFVAAVNSLGGPQKAMPKAVRQKMNSKSLTIFHVKSHLQKYRNTMYMQKTSKEGYEESLGRDMVTELQQKIAMQIEESRQLQLEIGRGIQEQLEVQRNLQMLVEEQKKQVNSVFGQKQTKQIGGSKSRENDGKMFLKNK 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2758 284 MobiDBLite consensus disorder prediction 269 284 - -
Ssu7g2758 284 SUPERFAMILY Homeodomain-like 132 188 IPR009057 -
Ssu7g2758 284 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 134 188 IPR006447 GO:0003677
Ssu7g2758 284 Pfam MYB-CC type transfactor, LHEQLE motif 218 263 IPR025756 -
Ssu7g2758 284 Gene3D - 133 192 - -
Ssu7g2758 284 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 116 265 - -
Ssu7g2758 284 Coils Coil 209 229 - -
Ssu7g2758 284 MobiDBLite consensus disorder prediction 258 284 - -
Ssu7g2758 284 Pfam Myb-like DNA-binding domain 138 187 IPR001005 -
Ssu7g2758 284 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 116 265 IPR044848 GO:0003700
Ssu7g2758 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 191 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2758 Ssu-Chr7 56726335 56728930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2758 109 272 G2-like Transcription Factor Family AT4G28610 40.964 3.27e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu7g2758 Myb_DNA-binding 2.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2758 - - gmx:100776650 427.172