Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2750 ATGGTCCCTGGTCGACGTTGTGATGTAAGTAATGGTGATGTTGCTACACCGACAAACAATCTATCTCAATATGAGGACGGTCAATCTGAAAATCTAAAAGAGGTTCCCAGTGAGACGGCCAATGAAGATTTTGCATATGATTTTACTGATGAAGAGGAAGACGGTGACTTTTTGCTTGGCACAGATGATAAGGATGATGAAACAACCTTATCTGAGGAGGAAAAACTGGAAAGAGTTGATGCAATTGATCCCAAGGATGAGATTGCATTATTACAAAAGGAGAGTGACATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAGGGACCCAAGTGACGATGAAGATGGGGAATATGAATCTGATTATGCTTCTGCTTTATCAGAGGACCATTTGGATTCTCCAGTCCATGAAGATGCTGGGCAGAAGGATCCTGCCGTTCCTATGGATGAAGATATCAAGTCTGGTGAGCACCTGGATGCCATGCAGTCCCAGGCAGAAGAACAGTGGGAATTACCTcatgaaaatttggaaaaaagagaaagtgagCATATAATTGCTGATGCAGCTGCTGCTGCAAGATCAGCACAACCCACTGGAAACACCTTCTCCACAACTAATGTTCGTACAAAGTTCCCTTTTCTACTCAAGTATTCTCTTCGTGAGTATCAAcatattggattggattggctCGTCACGATGTATGAAAAAAGACTGAATGGAATTTTGGCAGATGAAATGGGGCTTGGGAAAACAATTATGACTATAGCTTTGCTTGCACATCTTGCTTGTGAAAAAGGGATTTGGGGCCCACATTTAATTGTGGTACCAACTAGTGTAATGCTTAACTGGGAGACTGAATTTCTGAAATGGTGTCCTGcctttaaaattttgacttattttGGAAGTGCAAAGGAGCGAAAACTTAAAAGACAAGGGTGGTTAAAACCAAACTCGTTTCATGTATGCATAACAACTTATAGATTAGTCATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTGATCTTAGATGAGGCTCATCTCATTAAAAACTGGAAGTCGCAAAGGTGGCAGACGCTCTTGAATTTCAATTCAAAACGACGGATTCTCTTGACTGGTACGCCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCACATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCAGGGATGGTAGAGGGAGAGGAAAAAGTTAATAAGGAGGTTGTTGATCGTCTGCATAATGTCCTTCGTCCATTCTTACTCCGTCGATTAAAGCGAGATGTGGAGAAGCAACTTCCAATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGGAATTTGTATGAAGATTTCATTGCCAGCTCAGAGACCCAAGCCACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAGGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCTCTTGATATGTGTggtattgatattcagttaagTTCTTCTGTTTGCTCCATGCTTTTGCCTAGTCCCTTTTCAACGGTGAACCTAAGAGGTTTAGGTCTTTTATTCACTCATCTTGACTATAGCATGACTGCTTGGGAAAGTGATAAAGTACAAGCTATTGAGACCCCTGCGACTTTAATCATGGAACGTACTGATATGGCTGACCTAGAAGTAATTAGGCCTGGACAATGTCGAAAAAAGTTGCAAGGAACAAACATTTTTGAAGAGATCCAAAGGGAAATCTGGGAAGAGAGGCTAAAACAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAAAGACCCATCTACTCAACAACTCTAAGGGATCTTGTTACCTTAAGACATCCTGTATATGATATTCATCAGGTGAAAGCAAACCCTGTTTCATACTTGTACTCATCAAAGTTAGCTGACATTGTTCTCTCCCCGGTTGAACGATTTCAAAAGATGACTGATGTGGTTGAAGGTTTCATGTTTGCAATTCCAGCTGCACGAGCACCCTCTCCTGTTTGCTGGTGCAGTACAAGTGAGACAAATGTGTTTCTGCACCCATCTTACAAGCAGAAATGCTCTGAAGCTCTGTTACCGCTACTGTCACCAATCAGGCCTGCAATTGTCCGGCGGCAAATGTATTTCCCCGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAAGAACTAGCaattttgttgagaaaattaaaatcagaaGGTCACCGAGCTCTGATATTCACCCAGATGACAAAGATGCTTGACTTATTAGAggcatttattaatttgtatggCTATACATACATGCGCTTAGATGGATCAACCCAACCAGAGGAGAGACAGACCTTAATGCAGCGCTTTAACACAAACcccaaattttttcttttcatcttgtCAACCCGTAGTGGAGGTGTTGGTATCAATCTAGTTGGAGCTGACAcagttattttttatgatagtGACTGGAATCCTGCTATGGATCAACAGGCACAAGATCGGTGCCACAGAATTGGTCAGACACGTGAAGTTCATATCTATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATGATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTTGATCCTATGGAACTATTTTCAGGTCATAGAacactttcaataaaaaatatgccAAAGGAGAAAAACCAGAACAATGGGGAAGTTTCTGTAACTAATGCAGATGTAGAGGCTGCATTAAAATGTGTAGAAGATGAAGCAGATTATATGGCATTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAACCAGGAGTTTACAGAAGAAGCTATTGGGAGACTTGAAGAGGATGAATATGTAAATGAGGATGATGAAACTGCAGAACTAGGTGAATCTGTTTCgaatttaaataaagagaatgCGTTAATGTTAAATGGAAGTGATCATAAGGAAGATAGAACACCACATTCTGTTGCTGTCAAAGAAGATGATGCTGACATGCTGGCTGATGTCAACCAGATGGCTGCAGCTGCAGCTGCAGCTGGACAAGCTATCTCAGCATTTGAGAATGAGCTACGCCCTATTGATCGATATGCCATTCGTTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTCAGGATTGAGGACATGGAATGGGAGTTGGATCGCATTGAAAAGTACAAGGAGGAGATGGAAGCCGAAATTGATGAAGATGAGGAACCTCTTGTATATGAAAGCTGGGATGCCGATTTTGCAACTATGGCATATCGACAGCAAGTAGAGGCCTTGGCTCAACATCAGTTAATGGAGGAACTCGAATATGAAGCTAGACAGAAAGAAGCTGAGGAAGAAGCTTGTGATTCTAAAAAGACTCAAACACCAGGGGATTCGAAGCCCAAATCTAAAAAGAAACCCAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACCTCTGGCTTGAGACCTGTGAAAGAAGAGTCACAAGCAGAGCCAATGAACATAGATGATGAGGATGTCAACGGTCTGGATTTTGTGTCTCCAAATTCAACCATGCAGAAAAAACGTAAGAAGTCtggtgaagaagaaaagagactTAAGAAGTCCAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGCTTCCGATTTAGAATCCAACTCATTAGTTGTGCAGGATGAACATGCAGAATCAAAGACTTGTGAAAGTCTGGTTGATTTGGAACAGAAAACAGCAAGCAGGAGTAAGATGGGAGGAAAAATATCCATCACTCCTATGCCTGTAAAACGGATCTGGACGATAAAAccagaaaaattgaaaaagggaAATCATTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTGCCTCAGGAGGATGCAATATTATGTGCTGTTGTTCATGAATACGGTCCTAACTGGAGTTTGGTTAGTGAAACGCTTTATGGCATGACTGCTGGTGGGTCATACAGGGGGAGATATCGTCATCCTGTCCATTGTTGTGAGAGGTTCAGAGAACTATTCCAAAAGTATGTCTTGTTGTCTATGGACAATACAAATCATGAGAAGATCAACAGTCCTGGCTCTGGAAAGACTCTTCTTAAAGTTACAGAGGATAACATTCGGATGCTGTTAGATGTTGCTTCTGAGCAGGTAAATAGGGAGTTACTGATGCAGAAGCATTTTTTCGCATTGCTATCATCTGTCTGGAAGGTGGCATCACACATTGACCGCAGGCCAAATCCATCACCCACCTGTAATGGTCTCTATTTTGATCAGAGTTTCTTTACTTCCATTTGCCAGCCTTCACAAAATTCCTTGAAGAAACCCTCTGAAAGGATGGCATTTGTGAATTTGGCCCACAGCAAGAAGTTAGTAGCAGCTGCACTTGATGATACCACAACTAGGCAAGAGAATGACAAGGTCATCCACTCTAACCAAGAGGAAGACATGCGAGTGAGTGCAGATCAGCTGGATATAATTCTGGAGTTCCCGAAAGAGGAGAGTGACGTCCTATCTTCATTTCCATctgttataaatttaacagtATATGGGACTGAACCAACACCATCTTTAAATAAGCAAACAGGAGGAGATGACCTTAGAGTTGGTTTGTCCATTGCTGAGAATCGTTTCAGGGAGGCAGCAAGAGTTTGTGAAGAAGACAGCTCTGGATGGGCTTCATCTGCATTCCCAACCAACGATGCAAGGTCTCGACCTGGATCCAGGATACAATCCTCTGGAAAACAGAAGTCTTCCGTATCTGATTCTGCTAAGCCTTCTAGGTCAAAGTCCAAAAGAGCTTCAATGGATCCTAGTGAAATGCATCACCATCAGGCTGACTCAATATTCCAGTCAATACCACCACTTAAGGATCTGAGATTTGATCTCACTTCATCCACTACCGATGAAGTTGGAATTGATGGTATGGATAGCAATTTCCCCTTTGACTTGAATGGGGAAAGTTCATTGGAAATGGAGAGTGTTGGAACGATCCCACATGATTATGCTGCTGGTTTAATCTCAGACCTTGATGATTGTACGGCATTCCCTGAGTATACTGACATTAGATAA 5238 0.399 MVPGRRCDVSNGDVATPTNNLSQYEDGQSENLKEVPSETANEDFAYDFTDEEEDGDFLLGTDDKDDETTLSEEEKLERVDAIDPKDEIALLQKESDMPVEELLARYKRDPSDDEDGEYESDYASALSEDHLDSPVHEDAGQKDPAVPMDEDIKSGEHLDAMQSQAEEQWELPHENLEKRESEHIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSLDMCGIDIQLSSSVCSMLLPSPFSTVNLRGLGLLFTHLDYSMTAWESDKVQAIETPATLIMERTDMADLEVIRPGQCRKKLQGTNIFEEIQREIWEERLKQAKERAAAIAWWNSLRCKKRPIYSTTLRDLVTLRHPVYDIHQVKANPVSYLYSSKLADIVLSPVERFQKMTDVVEGFMFAIPAARAPSPVCWCSTSETNVFLHPSYKQKCSEALLPLLSPIRPAIVRRQMYFPDRRLIQFDCGKLQELAILLRKLKSEGHRALIFTQMTKMLDLLEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKFFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKNMPKEKNQNNGEVSVTNADVEAALKCVEDEADYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDETAELGESVSNLNKENALMLNGSDHKEDRTPHSVAVKEDDADMLADVNQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDMEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEARQKEAEEEACDSKKTQTPGDSKPKSKKKPKKAKFKSLKKGSLTSGLRPVKEESQAEPMNIDDEDVNGLDFVSPNSTMQKKRKKSGEEEKRLKKSKKSKRDPPDIYASDLESNSLVVQDEHAESKTCESLVDLEQKTASRSKMGGKISITPMPVKRIWTIKPEKLKKGNHWSKDCIPSADFWLPQEDAILCAVVHEYGPNWSLVSETLYGMTAGGSYRGRYRHPVHCCERFRELFQKYVLLSMDNTNHEKINSPGSGKTLLKVTEDNIRMLLDVASEQVNRELLMQKHFFALLSSVWKVASHIDRRPNPSPTCNGLYFDQSFFTSICQPSQNSLKKPSERMAFVNLAHSKKLVAAALDDTTTRQENDKVIHSNQEEDMRVSADQLDIILEFPKEESDVLSSFPSVINLTVYGTEPTPSLNKQTGGDDLRVGLSIAENRFREAARVCEEDSSGWASSAFPTNDARSRPGSRIQSSGKQKSSVSDSAKPSRSKSKRASMDPSEMHHHQADSIFQSIPPLKDLRFDLTSSTTDEVGIDGMDSNFPFDLNGESSLEMESVGTIPHDYAAGLISDLDDCTAFPEYTDIR 1745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2750 1745 Coils Coil 1155 1175 - -
Ssu7g2750 1745 MobiDBLite consensus disorder prediction 1165 1274 - -
Ssu7g2750 1745 MobiDBLite consensus disorder prediction 44 70 - -
Ssu7g2750 1745 SUPERFAMILY Homeodomain-like 1341 1398 IPR009057 -
Ssu7g2750 1745 Coils Coil 1100 1123 - -
Ssu7g2750 1745 MobiDBLite consensus disorder prediction 1165 1185 - -
Ssu7g2750 1745 CDD SF2_C_SNF 748 883 - -
Ssu7g2750 1745 Gene3D - 465 541 - -
Ssu7g2750 1745 Pfam Helicase conserved C-terminal domain 762 872 IPR001650 -
Ssu7g2750 1745 SMART ultradead3 215 408 IPR014001 -
Ssu7g2750 1745 Coils Coil 601 621 - -
Ssu7g2750 1745 Coils Coil 976 996 - -
Ssu7g2750 1745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 441 IPR027417 -
Ssu7g2750 1745 MobiDBLite consensus disorder prediction 1611 1667 - -
Ssu7g2750 1745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 443 945 IPR027417 -
Ssu7g2750 1745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 763 913 IPR001650 -
Ssu7g2750 1745 Gene3D - 188 464 IPR038718 -
Ssu7g2750 1745 SMART helicmild6 789 872 IPR001650 -
Ssu7g2750 1745 PANTHER HELICASE SRCAP-RELATED 29 1653 - -
Ssu7g2750 1745 MobiDBLite consensus disorder prediction 1648 1666 - -
Ssu7g2750 1745 ProSiteProfiles Myb-like domain profile. 1343 1396 IPR001005 -
Ssu7g2750 1745 Gene3D - 1339 1400 - -
Ssu7g2750 1745 CDD DEXQc_SRCAP 219 441 - -
Ssu7g2750 1745 Gene3D - 720 1031 IPR027417 -
Ssu7g2750 1745 MobiDBLite consensus disorder prediction 1241 1267 - -
Ssu7g2750 1745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 231 396 IPR014001 -
Ssu7g2750 1745 MobiDBLite consensus disorder prediction 1614 1647 - -
Ssu7g2750 1745 PANTHER HELICASE SRCAP 29 1653 - -
Ssu7g2750 1745 MobiDBLite consensus disorder prediction 12 35 - -
Ssu7g2750 1745 MobiDBLite consensus disorder prediction 1 123 - -
Ssu7g2750 1745 MobiDBLite consensus disorder prediction 71 113 - -
Ssu7g2750 1745 Pfam SNF2-related domain 236 508 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2750 Ssu-Chr7 56433988 56444608 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2750 709 902 RAD5 or RAD16-like Gene Family AT5G43530 31.604 7.36e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu7g2750 SNF2_N 5e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2750 - - gmx:100794898 3102.38