Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2748 ATGGACGTTCGCAAGCGTGGAAGGCCCGAGCCCGCCGTCAACCTTAACGGCGCCGTTAAGAAGACCAAGCAAGAAATGGAGTCCTTATCAAGTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGCTGCCCATTTGGCGAGGGCTGCCACTTCTTGCATTACGTTCCTGGTGGTTATAATGCTGTTGCCCATATGATGAATTTAAAACCTGCTGCTCCTCCACCAAGAACTGTTGCTGCACCACCACCTGTCCCTAATGGTTCTGCTCCATCTTCTGTTAAAACCCGCATATGTAACAAGTTCAACACTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCACTTTGCCCATGGTGAATGGGAACTTGGCAAACCTATTGCTCCATCAATTGATGATCATCGTCCTTTGGGACCTCCAGCAGCTGGTCGTATGGCTGGTCGAATTGAGCCTCCTCCTGGTTTGGCTGCTAGCTTTGGTGCCATTTCTACTGCCAAGATCAGTGTAGAAGCTTCCCTGGCCGGAGCTATCATTGGGAAAGGTGGTGTGAACTCAAAGCAGATCTGTCGCCAAACAGGAGCAAAACTCTCAATTCGAGAGCATGAATCTGATCCAAATCTTAGAAACATTGAGCTTGAGGGAACTTTTGAACAGATTAAGGAGGCAAGTAACATGGTAAAAGATTTACTTTTGACTGTGTCCATGTCTGCCCCACCCAAATCCACCTCAGGTGTTCCTGGCGCCCCTGCCACCCCTGGAAACAACTTCAAGACCAAGCTGTGTGAGAATTTTGCGAAAGGATCTTGCACCTTTGGAGAGAGATGTCACTTTGCTCATGGAGCTGCTGAATTGCGCAAGTCGGGagtatga 885 0.4859 MDVRKRGRPEPAVNLNGAVKKTKQEMESLSSGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLKPAAPPPRTVAAPPPVPNGSAPSSVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPSIDDHRPLGPPAAGRMAGRIEPPPGLAASFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGTFEQIKEASNMVKDLLLTVSMSAPPKSTSGVPGAPATPGNNFKTKLCENFAKGSCTFGERCHFAHGAAELRKSGV 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2748 294 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 157 237 IPR036612 GO:0003723
Ssu7g2748 294 CDD KH-I 169 232 - -
Ssu7g2748 294 SUPERFAMILY CCCH zinc finger 97 129 IPR036855 GO:0046872
Ssu7g2748 294 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Ssu7g2748 294 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Ssu7g2748 294 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Ssu7g2748 294 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Ssu7g2748 294 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Ssu7g2748 294 Pfam KH domain 170 232 IPR004088 GO:0003723
Ssu7g2748 294 Gene3D - 93 130 - -
Ssu7g2748 294 Gene3D - 259 292 - -
Ssu7g2748 294 SUPERFAMILY CCCH zinc finger 260 290 IPR036855 GO:0046872
Ssu7g2748 294 ProSiteProfiles Type-1 KH domain profile. 167 231 - -
Ssu7g2748 294 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 293 - -
Ssu7g2748 294 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Ssu7g2748 294 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 293 - -
Ssu7g2748 294 Gene3D K Homology domain, type 1 165 258 IPR036612 GO:0003723
Ssu7g2748 294 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Ssu7g2748 294 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Ssu7g2748 294 SMART kh_6 166 236 IPR004087 GO:0003676
Ssu7g2748 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Ssu7g2748 294 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 261 285 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2748 Ssu-Chr7 56365553 56370617 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2748 35 133 C3H Transcription Factor Family AT1G68200 26.263 1.31e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu7g2748 KH_1 3.3e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2748 - - gmx:100817463 557.755