Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2738 ATGTTTTCGTGGCTGGCAAGGATAGTGTCGGCGTGCTTGAGACCGGTGCGGCGATATGCGCGTATGAGCAAGGATGACGTCGACGACGGGTCCACCGTCGGCGACGCCCTCGTGTGGCACAGGGACCTCGAGAGGCACTCCTGCGGCGAGTTCTCCTTCGCGGTCGTGCAGGCCAACGAAGTCATCGAGGACCACAGCCAGGTCGAGACCGGCTCCGACGCCGTCTTCGTCGGCGTCTACGACGGACACGGCGGCCCCGAAGCCTCGCGCTTCATCAACGACCACCTCTTCCATAATCTCATGAGGGTTGCTCAAGAAAATGGTTCTATCTCTGAAGATATTATTAGAAATGCTATTTCTGCTACTGAGGATGGGTTTCTGACTCTTGTTCGAAGGAGTTATGGAATAAAGCCATTGATAGCAGCAATGGGTTCCTGTTGTCTGGTTGGTGTTATCTGGAGAGGGACACTATATATTGCGAATCTCGGAGACTCTCGTGCGGTAATTGGTTCTATAGGTAGATCTAACAAGATCATTGCTGAACAGTTGACCAAAGAGCACAACGCTAGCAAAGAGGAGGTTAGGCGAGAACTCAGGTCTTTGCATCCAGAAGATTCACAAATTGTGGTTATGAAGCAAGGAACCTGGCGAATTAAAGGCATCATCcagGTATCCAGATCTATAGGAGACGCATATTTGAAGCGGCCGGAGTTCTCGTTCGATCCTTCGTTCCCACGGTTCCACCTGCCTGAACCTATCCGCCGACCTGTGCTAACCGCAGAACCATCTGTATGTTCAAGAGTTTTAAGACCTAATGATAAATTCATTATCTTTGCATCTGATGGACTTTGGGAACATATAACAAACCAGGAAGCTGCTGAGATTGTTCATAACAATCCGCGAACCGGGATTGCAAGAAGACTTCTTAAGGCAGCTTTAAACGAAGCAGCTAGAAAAAGGGAAATGAGATATAAAGACCTTCAGAAGATTGGAAAGGGGATTAGGCGTTTCTTCCATGATGATATCACAGTGGTTGTTGTCTTCATCGACCACGAGTTGCGCGGGACGAAAGTTACAGTTCCTGAGTTGTCCATCAAAGGGTTTATTGACACAGTTGGACCATCGAATTTTAGAAATTTCCGGGCGTTGGAATGA 1155 0.4857 MFSWLARIVSACLRPVRRYARMSKDDVDDGSTVGDALVWHRDLERHSCGEFSFAVVQANEVIEDHSQVETGSDAVFVGVYDGHGGPEASRFINDHLFHNLMRVAQENGSISEDIIRNAISATEDGFLTLVRRSYGIKPLIAAMGSCCLVGVIWRGTLYIANLGDSRAVIGSIGRSNKIIAEQLTKEHNASKEEVRRELRSLHPEDSQIVVMKQGTWRIKGIIQVSRSIGDAYLKRPEFSFDPSFPRFHLPEPIRRPVLTAEPSVCSRVLRPNDKFIIFASDGLWEHITNQEAAEIVHNNPRTGIARRLLKAALNEAARKREMRYKDLQKIGKGIRRFFHDDITVVVVFIDHELRGTKVTVPELSIKGFIDTVGPSNFRNFRALE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2738 384 PANTHER ALPHABET, ISOFORM E-RELATED 6 369 - -
Ssu7g2738 384 Coils Coil 180 200 - -
Ssu7g2738 384 ProSitePatterns PPM-type phosphatase domain signature. 76 84 IPR000222 GO:0043169
Ssu7g2738 384 ProSiteProfiles PPM-type phosphatase domain profile. 50 349 IPR001932 -
Ssu7g2738 384 SUPERFAMILY PP2C-like 57 350 IPR036457 -
Ssu7g2738 384 Gene3D - 34 357 IPR036457 -
Ssu7g2738 384 PANTHER PROTEIN PHOSPHATASE 2C 68-RELATED 6 369 - -
Ssu7g2738 384 SMART PP2C_4 30 347 IPR001932 -
Ssu7g2738 384 Pfam Protein phosphatase 2C 65 318 IPR001932 -
Ssu7g2738 384 CDD PP2Cc 51 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2738 Ssu-Chr7 56030669 56034146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2738 1 380 PP2C-type Phosphatase Gene Family AT5G06750 70.844 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2738 K01102 - gmx:100778238 726.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2738 7 56030669 56034146 Ssu7g2738 7 56030669 56034146 ECH
Ssu4g1408 4 23422981 23425785 Ssu7g2738 7 56030669 56034146 PCT