Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2730 ATGGAACTGGCTTTGAGCTTAGGAGACACGTCGAGGCCCTTCACTTTTCTCGACAAGCCCGCGAATTTACCGTCCAAGGACCCACCAGGGTTCTGCATAGCACCGGGTTTCACCGTAGGGAAAGGCTCGGAGGATAAAAGAAGCGATGATGAGAGAAGGGGTTCCTCAGATCCACCCGTTCAACTCGACCTTCTTCCTTTCACTCCGGTTCTCAGACCCCAACCCCCTTCTCAGCTTCGAATCCCTTGGCTCACCGAAGCATGCGGCGCGGCGAGGGTGCTGGACGTGAACCTTTTTCCGGCGGCGGGGGAGGGCGGCGACGACGGCACGTCGCTGTCGTCCCCCAACAGTGCGGTGTCACCGTATCAGATGGATTTCAGCATCAGGAACGGTAATGCAGAGTTTGGAGGAAGAAACAAGAGGGAACAGCAAGAGGGTGAGGGGGAGAGAGCGAGTGATGACGAGGAAAATGGCTCAACTCGGAAGAAACTCAGACTCTCTAAAGAACAATCAGCTTTTCTCGAAGAAAGCTTCAAAGAACACACCACTCTCAATCCCAAGCAGAAACTTGCTTTGGCAAAACAGTTGAATCTCCGTCCTCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAAGTGGATTGTGAGTATTTGAAGAGGTGCTGTGAGACCCTAACAGAAGAGAATAGGAGGTTGCAGAAGGAACTTCAAGAACTGAGAGCCTTGAAAACTTCTCAACCATTCTACATGCAGCTTCCAGCCACCACTCTCACCATGTGTCCCTCTTGTGAAAGGGTTGCTACAAATTCCACCACCACTAACCAAACTTCCACTGTTAACAATGGTTCTGCAATCCCAGTGGAGTTGTCTCTTAGCAAGCCCAGAATATTGCCCTTCCCTAATGGCCAGGCCCAAGCACCGCAGGCCCAAACCCAAGGCCAAGCCCATCCCCATCTGATGGCCTCTTCATGA 996 0.5211 MELALSLGDTSRPFTFLDKPANLPSKDPPGFCIAPGFTVGKGSEDKRSDDERRGSSDPPVQLDLLPFTPVLRPQPPSQLRIPWLTEACGAARVLDVNLFPAAGEGGDDGTSLSSPNSAVSPYQMDFSIRNGNAEFGGRNKREQQEGEGERASDDEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTSTVNNGSAIPVELSLSKPRILPFPNGQAQAPQAQTQGQAHPHLMASS 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2730 331 MobiDBLite consensus disorder prediction 128 166 - -
Ssu7g2730 331 SMART HOX_1 159 221 IPR001356 GO:0003677
Ssu7g2730 331 MobiDBLite consensus disorder prediction 42 57 - -
Ssu7g2730 331 Pfam Homeobox associated leucine zipper 217 251 IPR003106 GO:0006355|GO:0043565
Ssu7g2730 331 Gene3D - 165 215 - -
Ssu7g2730 331 Coils Coil 223 253 - -
Ssu7g2730 331 CDD homeodomain 161 218 IPR001356 GO:0003677
Ssu7g2730 331 MobiDBLite consensus disorder prediction 135 166 - -
Ssu7g2730 331 ProSitePatterns 'Homeobox' domain signature. 192 215 IPR017970 GO:0000981|GO:0006355
Ssu7g2730 331 PANTHER - 2 291 - -
Ssu7g2730 331 MobiDBLite consensus disorder prediction 306 331 - -
Ssu7g2730 331 CDD bZIP 210 249 - -
Ssu7g2730 331 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 291 - -
Ssu7g2730 331 SMART halz 217 260 IPR003106 GO:0006355|GO:0043565
Ssu7g2730 331 MobiDBLite consensus disorder prediction 311 331 - -
Ssu7g2730 331 ProSiteProfiles 'Homeobox' domain profile. 157 217 IPR001356 GO:0003677
Ssu7g2730 331 MobiDBLite consensus disorder prediction 19 73 - -
Ssu7g2730 331 Pfam Homeodomain 161 215 IPR001356 GO:0003677
Ssu7g2730 331 SUPERFAMILY Homeodomain-like 154 218 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2730 Ssu-Chr7 55573837 55575598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2730 153 309 Homeobox Transcription Factor Family AT4G37790 68.987 1.08e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu7g2730 Homeodomain 2.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2730 K09338 - gmx:100779138 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2730 7 55573837 55575598 Ssu7g2730 7 55573837 55575598 ECH
Ssu4g1396 4 23217611 23218894 Ssu7g2730 7 55573837 55575598 PCT