Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2727 ATGTCGTGCTGCAGAGGTGCAGAAGAGGATTTTGGCGGTCCACCTGCAAACCAATACAGTGCATCACCTAAAAAGGGTAATACATACGGTGGAGGAGGAGGAGGTGACAGAGGAGAGCCAAGGGGCAATGTTGTGAAAAGTGGTGCTCCACAGAAAGCATTGCCTATTGAGATACCCGCTATTTCATTGAATGAGTTAAATCGGTTAACAGACAACTTTGGCACAAAGGCTTTGATAGGAGAAGGTTCTTATGGGAGGGTTTTCTATGCAAAGTTGAGCGATGGTATGGATGCAGCAATCAAGAAGCTAGATACTAGTTCTTCGCCAGAACCTGACTCTGATTTTGCAGCACAATTATCCGTTGTTTCAAGATTGAAGCATGACCATTTTGTGGAGTTGATGGGATATTGTCTAGAGGCAAATAACAGAATTTTTGTTTATCAATATGCAAGTTTGGGTTCTTTGCATGACATATTACATGGAAGGAAAGGAGTGCAAGGGGCTGAACCTGGTCCAGTTTTAAACTGGAACCAGAGAGTGAAAATTGCATTTGGTGCAGCAAAAGGACTTGAGTTTCTTCATGAAAAGGTTCAACCTTCTATAGTTCACCGCGATGTTAGATCCAGCAATGTCTTACTCTTCAATGACTACGAGGCCAAGATTGCAGATTTCAACTTGACAAACCAATCTTCTGACACTGCAGCTCGGCTACATTCAACAAGAGTCTTAGGAACATTTGGCTATCATGCTCCAGAGTATGCCATGACAGGGCAAATAACCCAAAAAAGTGATGTTTATAGTTTTGGGGTTGTGCTTTTGGAGCTTTTAACAGGAAGAAAGCCAGTGGACCATACAATGCCTAAAGGGCAACAAAGTCTTGTAACTTGGGCAACTCCAAGactgagtgaggacaaagtgaAACAATGTGTGGATCCTAAACTAAACAATGAATACCCACCCAAGGCAATTGCTAAGTTAGCAGCAGTTGCAGCGCTTTGTGTGCAGTATGAAGCTGACTTTAGGCCAAACATGACTATTGTTGTCAAAGCTCTCCAGCCACTTCTCAATTCAAAACCGGCTGGCGCTGAACCTAGCGCGAGAAGAACGAAGAGCAATCAAGTCACAATCAAGAGATGGAGGAGTGACATTGAGAAGAACAAGAGCAACATCGAGTGGCGAAGGAATGGCACCGAGAGGCAGAAGCTTGGTAACAAGGAGCTGAGGCACTTGGCCGTTTCGAAGAAGATCGAGAAAGTGATGATTCTTCATAACTTCAAAGAGTCGAATATCGATGTGTTTGACAAATCTCAAGATCCCCACACACATTTGCAAGCTTTCTag 1341 0.4288 MSCCRGAEEDFGGPPANQYSASPKKGNTYGGGGGGDRGEPRGNVVKSGAPQKALPIEIPAISLNELNRLTDNFGTKALIGEGSYGRVFYAKLSDGMDAAIKKLDTSSSPEPDSDFAAQLSVVSRLKHDHFVELMGYCLEANNRIFVYQYASLGSLHDILHGRKGVQGAEPGPVLNWNQRVKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFNLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNEYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNSKPAGAEPSARRTKSNQVTIKRWRSDIEKNKSNIEWRRNGTERQKLGNKELRHLAVSKKIEKVMILHNFKESNIDVFDKSQDPHTHLQAF 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2727 446 Gene3D Transferase(Phosphotransferase) domain 1 151 378 - -
Ssu7g2727 446 Gene3D Phosphorylase Kinase; domain 1 46 149 - -
Ssu7g2727 446 Pfam Protein tyrosine and serine/threonine kinase 77 351 IPR001245 GO:0004672|GO:0006468
Ssu7g2727 446 ProSiteProfiles Protein kinase domain profile. 73 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2727 446 ProSitePatterns Tyrosine protein kinases specific active-site signature. 201 213 IPR008266 GO:0004672|GO:0006468
Ssu7g2727 446 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Ssu7g2727 446 PANTHER OS03G0226300 PROTEIN 1 364 - -
Ssu7g2727 446 SUPERFAMILY Protein kinase-like (PK-like) 53 351 IPR011009 -
Ssu7g2727 446 SMART tyrkin_6 73 351 IPR020635 GO:0004713|GO:0006468
Ssu7g2727 446 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 364 - -
Ssu7g2727 446 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2727 Ssu-Chr7 55444803 55449687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2727 61 365 Receptor kinase-like Gene Family AT3G58690 43.464 3.06e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Ssu7g2727 PK_Tyr_Ser-Thr 8.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2727 - - gmx:100777194 657.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2727 7 55444803 55449687 Ssu7g2727 7 55444803 55449687 ECH
Ssu4g1389 4 23113758 23116403 Ssu7g2727 7 55444803 55449687 PCT