Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2721 ATGGACAAGACAACAACAGCCTCCGAGAGAGAAACCCAGGACTTCATGAACGTGGACTCCTTCTCCCAGCTCCCCTTCATCCGCCCCGCGCCCCCCATCAAGGAGAAACCCGGCATTCGCCTCTTCGGCATCGAATTCGCCGGCGGAGACAACTCTGCTGTCTCCGCCGACGACTCCGAGTCCGCCGAGacgacaaccaacaacaacctCACCTCATTCGACCTCGACCCCGCCAACAAGGACgacaccaccaccgccaccaccatcaccactgccgACACCAGCGGTGAGAGCAGCCGCCGGTTCGAGTGCCACTACTGCTGCCGAAACTTCCCCACCTCGCAGGCCCTCGGCGGCCACCAAAACGCGCACAAACGCGAACGCCAGCACGCCAAACGCGCGCACCTCCAGTCAACGATGGTGCACGGCGGCACCTTCTCCGACGCGCACCACGTGTACAACCTCATGAACTACCGCTTCGGCTCCGCTCCAACGACACCAATGCCTTATCCAACGTGGAACAACGCCGCCAACGCGAGGTTCTACGGAACGGCGACGTCGTTttctcacaaccatcatcagcagcaacaacaacaacaacctatCAATGGAAGCCCTTTGGCGTTTTGGCGAATTCCGAGTGGCACGAGCAATAACCCTAGTTTCAGCCACGAACGGTCGTTGCCGCCTTTGTTCGCGAGCGAGGAAATAACGAACGTGAGAGCCTCGCAGGTTGTCGGAGCCTCGGGTTCGCAAAACCGCTACGTGTATGACTCCAAACGCGGAAGTGTCCACGACCATGTGAGTTTGGATCTTCATCTGTAA 825 0.5285 MDKTTTASERETQDFMNVDSFSQLPFIRPAPPIKEKPGIRLFGIEFAGGDNSAVSADDSESAETTTNNNLTSFDLDPANKDDTTTATTITTADTSGESSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRAHLQSTMVHGGTFSDAHHVYNLMNYRFGSAPTTPMPYPTWNNAANARFYGTATSFSHNHHQQQQQQQPINGSPLAFWRIPSGTSNNPSFSHERSLPPLFASEEITNVRASQVVGASGSQNRYVYDSKRGSVHDHVSLDLHL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2721 274 MobiDBLite consensus disorder prediction 53 82 - -
Ssu7g2721 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Ssu7g2721 274 PANTHER ZINC FINGER PROTEIN GIS 1 274 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Ssu7g2721 274 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Ssu7g2721 274 MobiDBLite consensus disorder prediction 190 225 - -
Ssu7g2721 274 MobiDBLite consensus disorder prediction 54 82 - -
Ssu7g2721 274 Gene3D Classic Zinc Finger 78 152 - -
Ssu7g2721 274 MobiDBLite consensus disorder prediction 190 227 - -
Ssu7g2721 274 SUPERFAMILY beta-beta-alpha zinc fingers 99 130 IPR036236 -
Ssu7g2721 274 PANTHER ZINC FINGER PROTEIN GIS 1 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2721 Ssu-Chr7 55102788 55103612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2721 1 274 C2H2 Transcription Factor Family AT2G41940 40.214 6.11e-48 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2721 - - vun:114190818 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1383 4 22952649 22953422 Ssu7g2721 7 55102788 55103612 PCT