Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2713 ATGAGAACTTCGTGGGCGGATGCTGCTGACAATTCAGCCATTGGTTCTGGCGATACCAATGCCTCGGCTTACCCTCCCCGGCCGGCATATGTGCCTCCGCATCTTCGGAACCGGACATTGTCGTCAGAGGTTCCTGCGGTGTCACACTCGGCGCACACGGCTTCTTTGCCGGCAAATGACTGGGTGAATCATGGTGGTCCCGCTCCTCATCAGGGTGGTTACTTTAAAGCTGATCACGGGCGGCAAGGATATGGTTCTAATTTTCAGACTGGAGGTGGCTGGAATGGTAGAGGAGCAGGGAGGGACCGTGGGAGGCGCGAGGTGAACCCTTTTGAGAATGATGAAGCTGAGGATCAATCTTTTAGTGAGCAAGAGAACACGGGGATTAACTTTGATGCATATGATGATATCCCTGTGGAGACTAGTGGGGAGAATGTACCCCCGCCTGTGAATACATTCGCTGAAATAGATTTGGGTGAGGCATTGAATCAGAATATACAGAGATGCAAGTATGTGAAGCCAACCCCGGTTCAGAGGTATGCCATTCCAATTTCTCTTGCGGGCCGAGATTTGATGGCCTGTGCTCAGACTGGGTCAGGAAAGACAGCTGCCTTTTGCTTCCCTATTATAAGTGGAATCATGAGGGAGCATTATGTTCAAAGACCACGTGTGGCACGAACTGCTTTTCCTCTTGCACTTATCCTCTCCCCTACTCGGGAGCTTTCATGTCAGATACATGATGAGGCCAAAAAGTTTTCTTATCAAACAGGTGTCAAAGTGGTGGTTGCTTATGGAGGAGCACCAATCAACCAACAGCTACGGGAGCTTGAGAGAGGCGTTGATATTTTGGTGGCAACTCCAGGACGATTGGTGGATTTGCTTGAGAGGGCTAGGGTGTCATTGCAGATGATAAGATATTTGGCTCTTGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAGATAGTTGAACAAATGGACATGCCTCCTCCGGGCATGAGACAGACGCTGCTGTTTAGTGCCACATTTCCCAAAGAGATACAGAGACTTGCATCGGATTTTCTTGCAAATTATGTGTTTCTGACTGTTGGAAGGGTCGGTTCAAGTACTGATCTAATCGCTCAAAGAGTAGAATATGTGCTTGAATCAGACAAGAGAAGCCACCTCATGGACCTTCTTCATGCTCAGAGGGAAAATGGAATTTATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAGCTAGCATTCATGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGGTCATTCAAGACTGGAAACACACCAATTCTAGTGGCAACAGATGTTGCAGCACGTGGTCTTGACATCCCACGGGTAGCACATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCACCGGATAGGAAGAACAGGGCGAGCTGGTAAAATGGGATTAGCAACGGCCTTCTTCAATGAAAGTAATTTATCCTTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTTACCCGTTATGCGGCAAGGGCTACTTACAGTGGTGGCAACAGAAATAGGAGGTCAGGGGGATCCCGTTTTGGTGTCCGCGATTTTAGGAGGGAGGGGTCATTTAATAAAGGAAATGATTACTATGGTGGAACTGGTGGATGTGGCAATTATGGTGGAGGGTACGGTCAAGGTGTGACAAGTGCTTGGGATTAG 1812 0.4752 MRTSWADAADNSAIGSGDTNASAYPPRPAYVPPHLRNRTLSSEVPAVSHSAHTASLPANDWVNHGGPAPHQGGYFKADHGRQGYGSNFQTGGGWNGRGAGRDRGRREVNPFENDEAEDQSFSEQENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGEALNQNIQRCKYVKPTPVQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMREHYVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLANYVFLTVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGIYGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNLSLAKPLADLMQEANQEVPAWLTRYAARATYSGGNRNRRSGGSRFGVRDFRREGSFNKGNDYYGGTGGCGNYGGGYGQGVTSAWD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2713 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 520 IPR027417 -
Ssu7g2713 603 MobiDBLite consensus disorder prediction 1 35 - -
Ssu7g2713 603 Gene3D - 368 549 IPR027417 -
Ssu7g2713 603 CDD SF2_C_DEAD 378 514 - -
Ssu7g2713 603 Gene3D - 106 367 IPR027417 -
Ssu7g2713 603 MobiDBLite consensus disorder prediction 57 126 - -
Ssu7g2713 603 SMART helicmild6 424 505 IPR001650 -
Ssu7g2713 603 CDD DEADc_DDX3_DDX4 152 372 IPR044763 GO:0003724|GO:0005524
Ssu7g2713 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Ssu7g2713 603 MobiDBLite consensus disorder prediction 99 113 - -
Ssu7g2713 603 MobiDBLite consensus disorder prediction 1 19 - -
Ssu7g2713 603 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 52B-RELATED 43 577 - -
Ssu7g2713 603 Pfam Helicase conserved C-terminal domain 391 505 IPR001650 -
Ssu7g2713 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 366 IPR014001 -
Ssu7g2713 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 544 IPR001650 -
Ssu7g2713 603 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 43 577 - -
Ssu7g2713 603 SMART ultradead3 170 381 IPR014001 -
Ssu7g2713 603 Pfam DEAD/DEAH box helicase 175 355 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2713 Ssu-Chr7 54760288 54766058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2713 149 537 Eukaryotic Initiation Factors Gene Family AT3G19760 31.122 6.69e-61 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2713 K11594 - gmx:100818326 1028.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2713 7 54760288 54766058 Ssu7g2713 7 54760288 54766058 ECH