Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2712 ATGGGCGTCAATTCCCTGCCATCGGCGGAATCCACCCTCGACCTCGACGAGCAGATCTCGCAGCTCATGCAATGCAAGCCACTCTCCGACCACCAGGTTAGAGTTTTATGTGAGAAGGCTAAGGAGATTTTGATGGATGAAAGTAATGTCCAGCCTGTGAAAAGCCCCGTGACAATTTGTGGCGATATTCATGGGCAGTTTCATGATCTTGCTGAACTATTTCGAATTGGAGGGAAGTGTCCAGATACTAATTACTTGTTTATGGGTGATTATGTGGACCGGGGTTATTATTCAGTTGAAACTGTAACACTTCTTGTGGCACTGAAAGTGCGATATCCTCAGCGAATTACTATTCTTAGAGGAAACCATGAAAGCCGTCAGATCACTCAAGTATATGGGTTTTATGATGAATGTCTCAGAAAGTACGGTAATGCTAATGTTTGGAAGATCTTTACAGACCTTTTTGATTTCTTCCCATTGACTGCGTTGGTTGAGTCTGAAATATTTTGTTTGCATGGTGGGCTTTCACCTTCAATTGAGACTCTTGATAATATAAGGAACTTTGATCGTGTTCAAGAGGTTCCTCATGAAGGGCCCATGTGTGATCTGTTGTGGTCTGACCCAGATGATAGGTGCGGCTGGGGGATTTCTCCTCGTGGTGCTGGATTTACATTTGGCCAGGATATATCTGAACAATTTAATCACACAAACAATCTTAAGTTGATTGCTAGAGCTCATCAGCTGGTTATGGATGGATTTAACTGGGCTCATGAACAAAAGGTGGTTACAATTTTTAGTGCACCTAACTATTGTTATCGATGTGGGAACATGGCTTCCATTTTGGAGGTTGACGATTCCAAGGGCCACACATTTATCCAGTTTGAACCTGCTCCCAGGAGAGGAGAACCTGATGTCACCCGTAGAACACCGGATTACTTCCTATGA 945 0.436 MGVNSLPSAESTLDLDEQISQLMQCKPLSDHQVRVLCEKAKEILMDESNVQPVKSPVTICGDIHGQFHDLAELFRIGGKCPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANVWKIFTDLFDFFPLTALVESEIFCLHGGLSPSIETLDNIRNFDRVQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGFTFGQDISEQFNHTNNLKLIARAHQLVMDGFNWAHEQKVVTIFSAPNYCYRCGNMASILEVDDSKGHTFIQFEPAPRRGEPDVTRRTPDYFL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2712 314 ProSitePatterns Serine/threonine specific protein phosphatases signature. 119 124 IPR006186 GO:0016787
Ssu7g2712 314 Pfam Calcineurin-like phosphoesterase 56 247 IPR004843 GO:0016787
Ssu7g2712 314 SMART pp2a_7 28 298 IPR006186 GO:0016787
Ssu7g2712 314 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-4 CATALYTIC SUBUNIT 8 314 - -
Ssu7g2712 314 MobiDBLite consensus disorder prediction 295 314 - -
Ssu7g2712 314 CDD MPP_PP2A_PP4_PP6 14 298 - -
Ssu7g2712 314 PRINTS Serine/threonine phosphatase family signature 153 179 IPR006186 GO:0016787
Ssu7g2712 314 PRINTS Serine/threonine phosphatase family signature 56 83 IPR006186 GO:0016787
Ssu7g2712 314 PRINTS Serine/threonine phosphatase family signature 182 209 IPR006186 GO:0016787
Ssu7g2712 314 PRINTS Serine/threonine phosphatase family signature 238 258 IPR006186 GO:0016787
Ssu7g2712 314 PRINTS Serine/threonine phosphatase family signature 260 276 IPR006186 GO:0016787
Ssu7g2712 314 PRINTS Serine/threonine phosphatase family signature 118 142 IPR006186 GO:0016787
Ssu7g2712 314 PRINTS Serine/threonine phosphatase family signature 85 112 IPR006186 GO:0016787
Ssu7g2712 314 SUPERFAMILY Metallo-dependent phosphatases 9 299 IPR029052 -
Ssu7g2712 314 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 8 314 - -
Ssu7g2712 314 Gene3D - 8 314 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2712 Ssu-Chr7 54662134 54669960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2712 20 244 Calmodulin-binding Proteins AT5G63870 34.457 2.52e-33 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2712 K04382 - gmx:100801108 643.269