Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2708 ATGCAACCGCATGTACCGGATCAGGGCCTACCCAGGGAGAAGTTTCTCGAAAATAGAAGAGTGCGGTTACAAATATTACTAAGGAATTTACGGTTCCGCATCAAAGGTCTTTTTTTCTCCGTGTCTGCAAGACTGCAACAGAGATTGCGTTTCGTGAATTGTGAAGAAGGTGAAATAGCATCAAACATGAGAGGAAGAAGCTACAGCTACAGCCCATCACCTCCAAGGCGTTACAGCCGACGAAGGCGTAGTCCTAGCCCCAGGGGCCGTTACAGAGGACGTGATAGGGATTTGCCAACAAGTCTTCTGGTTCGAAACCTCCACAGAGATTGCAGGCCGGAAGATCTACATGGTCCATTTGGCCAATTTGGTCCTCTTAAGGATGTTTACCTGCCTCGAGATTACTATACTGGGGAGCCAAGAGGTTTTGGGTTTGTCCAGTATGTGGACCCAGCTGATGCTGCAGATGCAAAATATCACATGGACGGTCAAATTCTTCTTGGTCGTGAGTTAACTGTAGTGTTTGCGGAAGAAAACCGAAAGAAACCTGCTGAAATGAGATCAAGAGAACGTAGGAgGGATCGATCATATGATTATAGGCGATCCCCACAAATGTATTCACGTAGTCCAGACTATTCACCTTCTCCAAGACGAAGGCGACATTACAGGTCAATCTCACCAAGGGACAGAAGGTATAGGGATCGATCAAACTCTAGATCACCTTATGGATCAAGAACCCGCAGCAGAAGCAGGAGTTATAGCAGAAGCAGGAGTTACAGCAGGAGCTTGAGCCGAAGTCCAGGCTACTCTAGGTGA 816 0.4718 MQPHVPDQGLPREKFLENRRVRLQILLRNLRFRIKGLFFSVSARLQQRLRFVNCEEGEIASNMRGRSYSYSPSPPRRYSRRRRSPSPRGRYRGRDRDLPTSLLVRNLHRDCRPEDLHGPFGQFGPLKDVYLPRDYYTGEPRGFGFVQYVDPADAADAKYHMDGQILLGRELTVVFAEENRKKPAEMRSRERRRDRSYDYRRSPQMYSRSPDYSPSPRRRRHYRSISPRDRRYRDRSNSRSPYGSRTRSRSRSYSRSRSYSRSLSRSPGYSR 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2708 271 MobiDBLite consensus disorder prediction 181 271 - -
Ssu7g2708 271 Gene3D - 55 192 IPR012677 -
Ssu7g2708 271 MobiDBLite consensus disorder prediction 64 95 - -
Ssu7g2708 271 SMART rrm1_1 101 174 IPR000504 GO:0003723
Ssu7g2708 271 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 63 267 - -
Ssu7g2708 271 SUPERFAMILY RNA-binding domain, RBD 100 204 IPR035979 GO:0003676
Ssu7g2708 271 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A 63 267 - -
Ssu7g2708 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 178 IPR000504 GO:0003723
Ssu7g2708 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 171 IPR000504 GO:0003723
Ssu7g2708 271 MobiDBLite consensus disorder prediction 241 271 - -
Ssu7g2708 271 MobiDBLite consensus disorder prediction 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2708 Ssu-Chr7 54597759 54600863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2708 100 268 Eukaryotic Initiation Factors Gene Family AT4G34110 24.706 4.48e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2708 K12900 - gmx:100816913 223.787