Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2701 ATGGCTGACATCATTCACGAAGCTGGCGTCGTTCCAGATCCCACCCAAATCGACGTCAAACTCTTCAACCGCTGGAGCTTCGACGACGTTCAGGTTAATGATATTTCTCTGGCTGATTATATTGGAGTGGTGGCGTCGAAGAATGCTACTTATGTTCCTCACACTGCTGGGAGGTACTCTGTGAAGCGGTTCAGGAAAGCGCAGTGCCCCATTGTTGAGAGGCTCACCAACTCTCTCATGATGCATGGAAGGAACAATGGCAAGAAGCTCATGGCTGTCAGGATTATCAAGCATGCTATGGAAATCATTCATTTGCTCACTGATCAGAACCCAATTCAGGTCATCGTTGATGCTGTAATCAACAGtGGTCCCCGTGAAGATGCAACTAGAATTGGGTCTGCTGGTGTGGTAAGAAGACAGGCTGTGGATATCTCACCACTTCGGCGTGTTAATCAGGCAATCTATCTCCTAACAACAGGTGCACGGGAAGCTGCTTTCAGAAATATCAAGACAATTGCTGAATGCTTGGCTGATGAACTTATTAATGCAGCAAAAGGTTCATCTAACAGTTATGCTATCAAGAAAAAGGATGAAATTGAGAGAGTTGCCAAGGCTAATCGTTAA 624 0.4567 MADIIHEAGVVPDPTQIDVKLFNRWSFDDVQVNDISLADYIGVVASKNATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEIERVAKANR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2701 207 TIGRFAM uS7_euk_arch: ribosomal protein uS7 19 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
Ssu7g2701 207 ProSitePatterns Ribosomal protein S7 signature. 73 99 IPR020606 GO:0003723|GO:0003735|GO:0006412
Ssu7g2701 207 PANTHER 40S RIBOSOMAL PROTEIN S5 6 207 - -
Ssu7g2701 207 CDD uS7_Eukaryote 20 207 IPR005716 GO:0003735|GO:0006412|GO:0015935
Ssu7g2701 207 Pfam Ribosomal protein S7p/S5e 61 207 IPR023798 -
Ssu7g2701 207 PANTHER RIBOSOMAL PROTEIN S7 6 207 IPR000235 GO:0006412
Ssu7g2701 207 SUPERFAMILY Ribosomal protein S7 20 207 IPR036823 -
Ssu7g2701 207 PIRSF RPS7p_RPS7a_RPS5e_RPS7o 4 207 IPR000235 GO:0006412
Ssu7g2701 207 Gene3D Ribosomal protein S7 domain 4 207 IPR036823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2701 Ssu-Chr7 54419015 54421698 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2701 18 207 Cytoplasmic Ribosomal Protein Gene Family AT2G37270 92.105 7.92e-132 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2701 K02989 - gmx:100305898 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2701 7 54419015 54421698 Ssu7g2701 7 54419015 54421698 ECH