Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2688 ATGGGCAACAACTGCGTGGGACCGAACGTCGGCAGCGGCTTCCTGCAATCCGTCACGGCGGCGGTGTGGAAGTCGCGCCCGCCGGAGCCCCGCCTCCCGCCGCCTCCCGCCGAAACCAAAGCCGCCTCTCCCGCGCCGAGCGCCGGAGCCTCCAAAGCCTCGGAACCGGAACCTTCTCGGAGCTCCGATCCCCCGGCGCCGGTCCAGAGCACGCCGCCGGAGCCGGTCAAGATAGCTCCAGCGGGAGCGAAGCCGCTCCCGCTGGAGCCCGAGAAACCGGCCTCGGCGAAGCCGGTTTCGAGCGAGGCGCCGAAGAAGCCCGGCCACGTGAGGCGCGCGTCCAGCGCGGGACTCCAGGTGGAGTCGGTGCTGGGCCGCAAGACCGAGAACATGAAGGAGTTCTACAGCCTGGGGCGGAAGCTAGGTCAAGGGCAGTTCGGGACGACGTTTCTGTGCGTGGCGAAGGGCTCCAACGGGGAGTTCGCTTGCAAGTCGATCGCGAAGCGGAAGCTGACGACGCAGGAGGACGTGGAGGACGTGCGGAGGGAGATTCAGATCATGCACCACTTGGCGGGGCACCCAAACGTGATTCAGATAGTGGGGGCGTACGAGGACGCGGTGGCGGTGCACGTGGTTATGGAGTTGTGCGCCGGCGGGGAGCTCTTCGACAGAATCATACAGAGGGGGCATTACACGGAGAGGAAGGCCGCGGAACTTGCCAGGCTCATTGTTAGCGTCGTCGAGGCTTGTCACTCTCTAGGGGTCATGCATAGGGACTTGAAGCCGGAGaattttttgttcattaatCACGAGGAGGAGTCGCCTCTTAAGACCATAGATTTTGGACTGTCCATGTTCTTCAGACCAGGTGAAACATTTACTGATGTGGTTGGGAGCCCATACTATGTGGCCCCTGAAGTTTTGCGGAAGCATTATGGTCCAGAATGTGATGTTTGGAGTGCTGGGGTGATCATCTATATTTTACTCAGTGGAGTTCCCCCATTTTGGGATGAAACGGAACAGGGAATATTTGAGCAAGTTTTGAAAGGGGAGCTTGATTTTATTTCTGAACCCTGGCCTAGCATATCTGACAGCGCAAAGGATCTTGTCCGAAGGATGCTTGTAAGGGACCCTAAGAAGCGGATGACAGCACATGAAGTTCTTTGCCACCCCTGGGTTCAGGTTGGAGGTGTTGCTCCTGATAAACCACTTGATTCCGCTGTCTTGTCTCGTTTGAAGCAATTCTCTGCAATGAACAAGCTCAAAAAAATAGCCATTCGAGTAATTGCTGAAAATCTGTCAGAGGAAGAAATTGCAGGACTGAAAGAAATGTTCAAAATGATAGATACAGATAATAGCGGACAGATCACTCTTGAGGAACTGAAAAATGGTTTGGAGAGAGTGGGTTCCGTTCTTAAGGATTCTGAAATTAGTTGGTTAATGCAAGCGGCAGACATTGATAACAGTGGTACCATAGACTATGGTGAATTCATAGCAGCTATGCTTCATCTAAACAAGATCCAGAAGGAGGATCATCTATATGCAGCATTCACATACTTTGACAAAGATGGGAGTGGATACATTACAAAAGATGAGCTCCAACAAGCCTGCGAACAGTTTGGCCTAAAGGATTATCAACTAGATGATATAATACGTGAAATTGACCAGGATAATGATGGACGCATTGATTACAGTGAGTTTGCTGCAATGATGCAAGACACTGGTTTTGGCAAAAAGGGGTTCCAAACAGCATGA 1755 0.5276 MGNNCVGPNVGSGFLQSVTAAVWKSRPPEPRLPPPPAETKAASPAPSAGASKASEPEPSRSSDPPAPVQSTPPEPVKIAPAGAKPLPLEPEKPASAKPVSSEAPKKPGHVRRASSAGLQVESVLGRKTENMKEFYSLGRKLGQGQFGTTFLCVAKGSNGEFACKSIAKRKLTTQEDVEDVRREIQIMHHLAGHPNVIQIVGAYEDAVAVHVVMELCAGGELFDRIIQRGHYTERKAAELARLIVSVVEACHSLGVMHRDLKPENFLFINHEEESPLKTIDFGLSMFFRPGETFTDVVGSPYYVAPEVLRKHYGPECDVWSAGVIIYILLSGVPPFWDETEQGIFEQVLKGELDFISEPWPSISDSAKDLVRRMLVRDPKKRMTAHEVLCHPWVQVGGVAPDKPLDSAVLSRLKQFSAMNKLKKIAIRVIAENLSEEEIAGLKEMFKMIDTDNSGQITLEELKNGLERVGSVLKDSEISWLMQAADIDNSGTIDYGEFIAAMLHLNKIQKEDHLYAAFTYFDKDGSGYITKDELQQACEQFGLKDYQLDDIIREIDQDNDGRIDYSEFAAMMQDTGFGKKGFQTA 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2688 584 Gene3D - 400 575 - -
Ssu7g2688 584 PANTHER SERINE/THREONINE-PROTEIN KINASE 74 576 - -
Ssu7g2688 584 ProSiteProfiles EF-hand calcium-binding domain profile. 508 543 IPR002048 GO:0005509
Ssu7g2688 584 SMART efh_1 440 468 IPR002048 GO:0005509
Ssu7g2688 584 SMART efh_1 546 574 IPR002048 GO:0005509
Ssu7g2688 584 SMART efh_1 476 504 IPR002048 GO:0005509
Ssu7g2688 584 SMART efh_1 512 540 IPR002048 GO:0005509
Ssu7g2688 584 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Ssu7g2688 584 ProSiteProfiles EF-hand calcium-binding domain profile. 472 507 IPR002048 GO:0005509
Ssu7g2688 584 ProSitePatterns Serine/Threonine protein kinases active-site signature. 255 267 IPR008271 GO:0004672|GO:0006468
Ssu7g2688 584 ProSiteProfiles EF-hand calcium-binding domain profile. 546 577 IPR002048 GO:0005509
Ssu7g2688 584 MobiDBLite consensus disorder prediction 60 80 - -
Ssu7g2688 584 CDD STKc_CAMK 134 392 - -
Ssu7g2688 584 ProSitePatterns Protein kinases ATP-binding region signature. 141 168 IPR017441 GO:0005524
Ssu7g2688 584 Pfam Protein kinase domain 135 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2688 584 MobiDBLite consensus disorder prediction 21 117 - -
Ssu7g2688 584 ProSitePatterns EF-hand calcium-binding domain. 555 567 IPR018247 -
Ssu7g2688 584 MobiDBLite consensus disorder prediction 27 41 - -
Ssu7g2688 584 Gene3D Phosphorylase Kinase; domain 1 137 220 - -
Ssu7g2688 584 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Ssu7g2688 584 SMART serkin_6 135 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2688 584 Gene3D Transferase(Phosphotransferase) domain 1 221 397 - -
Ssu7g2688 584 SUPERFAMILY EF-hand 432 572 IPR011992 -
Ssu7g2688 584 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Ssu7g2688 584 Pfam EF-hand domain pair 441 501 IPR002048 GO:0005509
Ssu7g2688 584 Pfam EF-hand domain pair 511 572 IPR002048 GO:0005509
Ssu7g2688 584 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 2 74 576 - -
Ssu7g2688 584 SUPERFAMILY Protein kinase-like (PK-like) 134 394 IPR011009 -
Ssu7g2688 584 ProSiteProfiles Protein kinase domain profile. 135 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2688 584 ProSitePatterns EF-hand calcium-binding domain. 521 533 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2688 Ssu-Chr7 53965320 53971648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2688 1 584 EF-hand Containing Proteins AT2G38910 74.873 0.0 901
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu7g2688 Pkinase 7.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2688 K13412 - gmx:100813232 1018.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2688 7 53965320 53971648 Ssu7g2688 7 53965320 53971648 ECH
Ssu4g0765 4 11829762 11834155 Ssu7g2688 7 53965320 53971648 PCT