Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2679 ATGGAGGTTCCAGAAATGGAAGGCAAGACCGAAAGTCATATGACATCGGCAGCGGCCTTTGTGGAAGGGGGGATTCAAGAAGCCTGTGATGATGCTTGCAGCATATGCCTTGAGGATTTTTGCAAAAGTGATCCTGCAACTGTCACTAATTGCAAGCATGAGTTCCACCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAATGCCCTATGTGTTGGCAGCGTATCAGCTTGAAGGATGCTACCAGTCAAGAACTTCTTGAGGCAGTAGAGCTGGAGAGGAGCTTGAGGGATACCCCATCAAGAAATGCTGCAATTTTTCATCATCCGACACTTGGTGATTTTGAATTGCAGCATTTACCCATGGGTGCAAATGAGTCTGATATTGAAGAGCgaataattcaacatttaacTGCTGCAGCAGCAATGAGGAGAGCACACCACCTTGGCCGGAGGGAAGGCCAACGAACTAGGTCATCATCTGCTCATGGCCATCCACACTTCTTAGTATACTCAACTCAGCCTAGTGCACCTCCATCAACTGCTGGAGGGGGAAGTGAACCAGCTGCAATTCCTGTTGGAAGTCCATCTACCCCACTTACATTTAATGGAAATGAGCAATCATCACCACAGCATATCCCCCAATTTCAAACTCAGAGTTCTTCTGGGTCTACTGTCGTGGCAACAAATCTTCAAGGAATTCACTCCAATGATAGAAGGTTTGCCTCTCACTCTTTGCCTGCAAGCCGAGATAGAGCACAGCCATCAGAACAATCGTTCTCCGATTCTCTGCGTTCCAGATTTAATGCAGTATCCATGAGATACAAAGAATCAATTTCAAAGGGCACGAGGGGATGGAAGGAGAGGCTGTTCTCTCCTAATTCTTCTATGTCAGAGCTTGGTTCAGAAGTTAGGAGAGAATTGAATGCCAAAATTGCTAGTGTGTCCCGATTGATGGAGCGCCTTGAAACAAGAGAAAATGATAGTGCTGCGGGCACCTCTTTATCAAATCATTTGGTGAATCGTTCCATTGCAGAGACAAGCAACCAAAACAATGTGGAAGCTCGTGGAGGGAACTCTTTGCATGACAATAATACTTCAGCTACCCACTCTGCTCGCTCAGATTCGAGATGA 1137 0.4582 MEVPEMEGKTESHMTSAAAFVEGGIQEACDDACSICLEDFCKSDPATVTNCKHEFHLQCILEWCQRSSQCPMCWQRISLKDATSQELLEAVELERSLRDTPSRNAAIFHHPTLGDFELQHLPMGANESDIEERIIQHLTAAAAMRRAHHLGRREGQRTRSSSAHGHPHFLVYSTQPSAPPSTAGGGSEPAAIPVGSPSTPLTFNGNEQSSPQHIPQFQTQSSSGSTVVATNLQGIHSNDRRFASHSLPASRDRAQPSEQSFSDSLRSRFNAVSMRYKESISKGTRGWKERLFSPNSSMSELGSEVRRELNAKIASVSRLMERLETRENDSAAGTSLSNHLVNRSIAETSNQNNVEARGGNSLHDNNTSATHSARSDSR 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2679 378 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 7 377 - -
Ssu7g2679 378 MobiDBLite consensus disorder prediction 325 378 - -
Ssu7g2679 378 SMART ring_2 33 73 IPR001841 -
Ssu7g2679 378 MobiDBLite consensus disorder prediction 145 226 - -
Ssu7g2679 378 Pfam Ring finger domain 32 73 IPR001841 -
Ssu7g2679 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 90 IPR013083 -
Ssu7g2679 378 SUPERFAMILY RING/U-box 25 80 - -
Ssu7g2679 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 7 377 - -
Ssu7g2679 378 Coils Coil 306 326 - -
Ssu7g2679 378 MobiDBLite consensus disorder prediction 329 378 - -
Ssu7g2679 378 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Ssu7g2679 378 MobiDBLite consensus disorder prediction 244 263 - -
Ssu7g2679 378 MobiDBLite consensus disorder prediction 197 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2679 Ssu-Chr7 53765159 53769333 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2679 30 81 C3H Transcription Factor Family AT4G00335 46.154 1.84e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2679 K19043 - gmx:100803582 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2679 7 53765159 53769333 Ssu7g2679 7 53765159 53769333 ECH