Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2670 atgagagagagagagaagaagaaggaggaggaggaggaggggaaggaggaggaggaagaagaggaggCAGGGGAAGACGAAAAAGAACCTAAGATTGGGATGACGTTCAACTCAAAAGATGAAATAACTACGGCATCTCACAATCTCCTGGAGTCAGTGGCAGAACAAATTGCAACCATTGCTTTAGCCAAGCACCGCCAGATTTGTGTTGTTTCATGTGCTAGTTGGAAACCTCATGTGGCATTTGGTGCAGTTGATTACTTAGACGTTGAGATTCTTAGACACAAAAGAGATGTGGCAAACCACACTGCCATcagtttattttcaaagatttataaaaataggattaaGAgaTTGACATATAGTGGTAAACCAGGCAACGGTAACCCGATATTTGAAAATCACAGTGTCCGAAAGCTAGTTCAGTCCGCTgcaccttcttcttcttcatctccttTTCGTTACTCAAAAAACCTTGACATTGCAGCCAAAGCTGTGGTTGCTGACTTCTTTATTAAAACCATGTGCCATACTGTGCTTCTGTTTCTCCAAATGGCTAAGGGTTGCACCATCAACACGTATGAAGAGGCTAGAAAACAAAGActtgaagaaaacaagaagaGGTTTGAGGATTTGGGAATTTCAAGgatatcaaaaaaattgattgaaataacAAGTTCTGCAAAGAAGCCACAGCATCATCATCCTAAACTGAAACCAAACAAGACTAATGGTGAAGTGGAACCAAGGCGTTCTTCTCGTGTGCGAAACACAGTTCCTTCATACCGTGAAGATGTGACTGTAGACTTTCCACCGTTGCGGAAAAGGTCAAGGTCAAATTCTTCAACATGGGGAAGTTACGTTGCCAGGCCACTAGATGAAATCAAAGAAGCAACAGAAGAGGAAAGACTTTGTGCTCTGGAGGCTGCAGAGGCACTCCAAATCAATTTGAACTCTTCTAATCCATCATTTATCAAGTCAATGGTTCGGTCTCACGTTTATAGTTGCTTTTGGTTGGGTCTTCCTTCTAAATTCTGTGAGGAACATCTTCCAAAAACTGTATATGACATGGTTTTAGAAGATGAAAATGGCTCAGAATATGAGGCTGTTTACATTGGCAATAGAAGTGGGCTTAGTGGTGGCTGGAGAGCATTTGCATTGGATCATAAACTGGATGATGGTGATGCCCTTGTTTTTGAATTGATTGAAGCTTCAAGGTTTAAGATTTATATTGTTAGAGCATTTCCAGATTCAGTTGAAGAAAAGGGAAAGGATATCTTAGAGGAAGAAGGAAATATGAGTGCAACCAAAGCACCAAAAGTTGCCTGTAATCTTGAATCAGAATCCAAGACCAAAAAGCCAAAACAGGCTATGGTATATGAAACTGTGGAATCAGAGAGTTCTCAGGAGCATCTGCCAGATGGTAGCATTGACAACGAAGTCAAACCACAGGGGGTAAATCCAACtaagaaaactaaattttcTCAGAAAAATATACAAGCTGCTGAGTCAAAAGGGAAAGTGGTACTTAAAACTGAGAAACGAAAGGCGTCTGTAAAGCTGTCAAACAAGACAAGGAAGTCACAAAAAGGTATTGCAAATGAAATTGGTGACTCAGGCAAGTCAGAGAAGAATGGGTTTGTTCAGGATGCTGATAGCAAGTTAGAGAAAGTTGAACTAGTTGAAGAGGCAAGCAAATGTGTGTCACAAAAAGCTAGAAAAAAACCAGCTCCAAGGTTTTTCAGAAAGAAAGCATAA 1758 0.3663 MREREKKKEEEEEGKEEEEEEEAGEDEKEPKIGMTFNSKDEITTASHNLLESVAEQIATIALAKHRQICVVSCASWKPHVAFGAVDYLDVEILRHKRDVANHTAISLFSKIYKNRIKRLTYSGKPGNGNPIFENHSVRKLVQSAAPSSSSSPFRYSKNLDIAAKAVVADFFIKTMCHTVLLFLQMAKGCTINTYEEARKQRLEENKKRFEDLGISRISKKLIEITSSAKKPQHHHPKLKPNKTNGEVEPRRSSRVRNTVPSYREDVTVDFPPLRKRSRSNSSTWGSYVARPLDEIKEATEEERLCALEAAEALQINLNSSNPSFIKSMVRSHVYSCFWLGLPSKFCEEHLPKTVYDMVLEDENGSEYEAVYIGNRSGLSGGWRAFALDHKLDDGDALVFELIEASRFKIYIVRAFPDSVEEKGKDILEEEGNMSATKAPKVACNLESESKTKKPKQAMVYETVESESSQEHLPDGSIDNEVKPQGVNPTKKTKFSQKNIQAAESKGKVVLKTEKRKASVKLSNKTRKSQKGIANEIGDSGKSEKNGFVQDADSKLEKVELVEEASKCVSQKARKKPAPRFFRKKA 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2670 585 MobiDBLite consensus disorder prediction 225 256 - -
Ssu7g2670 585 Pfam B3 DNA binding domain 324 412 IPR003340 GO:0003677
Ssu7g2670 585 MobiDBLite consensus disorder prediction 482 498 - -
Ssu7g2670 585 CDD B3_DNA 322 413 IPR003340 GO:0003677
Ssu7g2670 585 MobiDBLite consensus disorder prediction 442 498 - -
Ssu7g2670 585 SUPERFAMILY DNA-binding pseudobarrel domain 319 413 IPR015300 -
Ssu7g2670 585 Gene3D - 298 415 IPR015300 -
Ssu7g2670 585 MobiDBLite consensus disorder prediction 1 33 - -
Ssu7g2670 585 Coils Coil 1 29 - -
Ssu7g2670 585 MobiDBLite consensus disorder prediction 12 26 - -
Ssu7g2670 585 ProSiteProfiles B3 DNA-binding domain profile. 324 415 IPR003340 GO:0003677
Ssu7g2670 585 MobiDBLite consensus disorder prediction 239 253 - -
Ssu7g2670 585 MobiDBLite consensus disorder prediction 514 548 - -
Ssu7g2670 585 Gene3D - 36 100 IPR043133 -
Ssu7g2670 585 Coils Coil 192 212 - -
Ssu7g2670 585 SMART B3_2 324 415 IPR003340 GO:0003677
Ssu7g2670 585 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 187 428 IPR044837 -
Ssu7g2670 585 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS05G0481400 187 428 - -
Ssu7g2670 585 MobiDBLite consensus disorder prediction 565 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2670 Ssu-Chr7 53578688 53585341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2670 194 414 B3 DNA Binding Superfamily AT5G58280 52.016 1.13e-73 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu7g2670 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2670 - - gmx:100786265 618.616