Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2664 ATGGATTCAAAAAATGTGCCGAACCTAAACAATGTTGTTAAGAAAACCAAAGGTCGACAAAAGATCGAGATGAAGAAGATGAGCAACGAGCAGAACCTTCAGGTGACGTTCTCAAAGCGTCGCACTGGGATTTTCAAGAAAGCCAGCGAGCTTGCGACTCTCTGTGGTGTGGACCTTGCTGTTATCGTGTTCTCACCTAGTCACCGAGTTTTCTCGTTCGGCACCCCTAGCGTGGATTCTATTATCCAACGCTATATGGGGCGGGTCCCACCTCCCCTCCTCAACTTAGACCTTAACGAGGCCCACATCACTATGGACGAGAGTGAGCTCCATGCGCACCTCGCTTACCTGTCCAACCAGCTCGCCTTCGAGAAGAAGCGGGCAGAGGATCTAGACCATTTGCTGAAGGCTATAGAGCATCAATTTTGGTGGGCGAAGCCAATTGAAAGCATGAACAAGGCCCAACTTGAGAAGTACAAGACAGTATTGGAGGAGTTGAAGACACatgtcaatgaaaaaaaagaaaagctccTCTTTAAGAGTGCTTTTACTTATAACTCACCTCAGCTTTTTGTAGGTGGAAGCTCATCTTCCAGTGTTAATAACACTGTGACTGTGTGTTCGCCTCCATTGATGCAGAATCGTGTGGGTGTGATTGATGGAAGCATCTTGCGCCATCGTCAATTTAACATGCATGAACATGGACATAGAGATGGACCTACTTTTAGGTTCTTTTGA 738 0.4526 MDSKNVPNLNNVVKKTKGRQKIEMKKMSNEQNLQVTFSKRRTGIFKKASELATLCGVDLAVIVFSPSHRVFSFGTPSVDSIIQRYMGRVPPPLLNLDLNEAHITMDESELHAHLAYLSNQLAFEKKRAEDLDHLLKAIEHQFWWAKPIESMNKAQLEKYKTVLEELKTHVNEKKEKLLFKSAFTYNSPQLFVGGSSSSSVNNTVTVCSPPLMQNRVGVIDGSILRHRQFNMHEHGHRDGPTFRFF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2664 245 CDD MADS_MEF2_like 18 86 IPR033896 GO:0000977|GO:0045944
Ssu7g2664 245 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Ssu7g2664 245 Coils Coil 156 176 - -
Ssu7g2664 245 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 16 207 - -
Ssu7g2664 245 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Ssu7g2664 245 Gene3D - 29 91 IPR036879 GO:0003677|GO:0046983
Ssu7g2664 245 PANTHER MADS BOX PROTEIN 16 207 - -
Ssu7g2664 245 SUPERFAMILY SRF-like 18 99 IPR036879 GO:0003677|GO:0046983
Ssu7g2664 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Ssu7g2664 245 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Ssu7g2664 245 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Ssu7g2664 245 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2664 Ssu-Chr7 53404557 53405294 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2664 12 200 Type I MADS-box Gene Family AT5G60440 46.154 1.71e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Ssu7g2664 SRF-TF 4.7e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2664 - - ccaj:109815930 308.145