Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2662 ATGAACAACACAGCTGATTCCTCTGGACTCCTGGGCTCCAATGACATAAGTGGCTTTGGCATGGGCATAGGAATTTCCATTGGTATTCTTCTGCTTATCACAACCATCACACTCACTTCCTACTTCTGCACCAGGACACAGGTGCCAGCTGCTCCTAGGAGAAGTAGTACTGGCCCACAATTCCTTGAGCCACAGCACACAATAGTTGATGTTGGGCTAGGTGAAGCCACAATCATGAATTACCCAAAGATGCTGTACTCTGAAGCCAAGCTCAGGAAATCTGATTCCACAGCAACAAGCTGTTCCATATGTCTGGGAGACTACAAAAGTTCTGATTTGCTAAGGGTGTTGCCTGATTGTGAGCATGTCTTCCACCTCAAGTGCATAGATCCATGGTTGAGGCTGCATCCAACTTGTCCTCTCTGCAGAACATCACCAATCCCAACACCTCTCTCAACACCTCTGGCTGAAGTGGTCCCATTAGCAACCAGGCGAGATTAA 501 0.477 MNNTADSSGLLGSNDISGFGMGIGISIGILLLITTITLTSYFCTRTQVPAAPRRSSTGPQFLEPQHTIVDVGLGEATIMNYPKMLYSEAKLRKSDSTATSCSICLGDYKSSDLLRVLPDCEHVFHLKCIDPWLRLHPTCPLCRTSPIPTPLSTPLAEVVPLATRRD 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2662 166 ProSiteProfiles Zinc finger RING-type profile. 101 143 IPR001841 -
Ssu7g2662 166 SMART ring_2 101 142 IPR001841 -
Ssu7g2662 166 Pfam Ring finger domain 100 143 IPR001841 -
Ssu7g2662 166 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 164 IPR045899 -
Ssu7g2662 166 SUPERFAMILY RING/U-box 78 148 - -
Ssu7g2662 166 CDD RING-H2_PA-TM-RING 101 143 - -
Ssu7g2662 166 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Ssu7g2662 166 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 5 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2662 Ssu-Chr7 53268936 53269436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2662 6 163 C3H Transcription Factor Family AT2G35910 62.346 4.07e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2662 - - gmx:121172638 265.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0777 4 11966532 11967311 Ssu7g2662 7 53268936 53269436 PCT