Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2659 ATGGCTGCTACAGCCTCTGCTTGCTCCCGTATTTGCAACATGTCACTCAGCTTCAACTTCCCACACAGAGCCATATCGTTAAAACCCCTCAACCTCAAGCCCCCACTTTTGGGCCCTTCTCCTTTCTCACTCTACCAGCTTCCCCTGCCTTCGGTTTCCCTCCAACAACACCCCGAACCTCAAACCCTCCAAAAACCAGAGCCAAATGCGTCACACTCAAACCAATCACGGAGACTCTATGTGGAAAACTTGCCTTATTCGTTGCCCTCTTCCCAGCTGGCTCAGCTGTTTGGAGAGGCTGGCAATGTTGTATCCGTCGAGATTGTGTATGATGACCTTATGGATAGAAGTAGAGGGTTTGCGTTTGTTACAATGGGGAGCGTGGAGGAAGCTGAACGAGCAATTCGAATGTTTGATGGCTCTGAAATTGGAGGTAGGATTATTAAGGTAAACTTCACTGTAATACCCAAAAGAGGCAAAAGGCTAGTAATGGATTCAAGCTATAGAGGCTTTGTAGACAGTCCTCACAAGATTTATGCTGGAAACCTTGGTTGGGGTCTGACTTCACAAGGTCTTAGATATGCCTTTGCTGAGCAGCCAGGCTTCCTGAGTGCCAAAGTCATCTATGAAAGGAACAGTGGAAAATCTCAGGGATATGggtttgtctcttttgaaactGCTGAGGATGTAGAAGCTGCTTTGAATTCTATGAATGGTGTGGAGGTTCAAGGACGGCTCTTACGACTGAATCTAGCTGTAGATAAGAAGACTTATCTCCTGCAGTAA 786 0.4567 MAATASACSRICNMSLSFNFPHRAISLKPLNLKPPLLGPSPFSLYQLPLPSVSLQQHPEPQTLQKPEPNASHSNQSRRLYVENLPYSLPSSQLAQLFGEAGNVVSVEIVYDDLMDRSRGFAFVTMGSVEEAERAIRMFDGSEIGGRIIKVNFTVIPKRGKRLVMDSSYRGFVDSPHKIYAGNLGWGLTSQGLRYAFAEQPGFLSAKVIYERNSGKSQGYGFVSFETAEDVEAALNSMNGVEVQGRLLRLNLAVDKKTYLLQ 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2659 261 Gene3D - 160 258 IPR012677 -
Ssu7g2659 261 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 4 257 - -
Ssu7g2659 261 PANTHER OS02G0815200 PROTEIN 4 257 - -
Ssu7g2659 261 Gene3D - 51 159 IPR012677 -
Ssu7g2659 261 SUPERFAMILY RNA-binding domain, RBD 173 256 IPR035979 GO:0003676
Ssu7g2659 261 SUPERFAMILY RNA-binding domain, RBD 64 158 IPR035979 GO:0003676
Ssu7g2659 261 CDD RRM_HP0827_like 78 153 - -
Ssu7g2659 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 155 IPR000504 GO:0003723
Ssu7g2659 261 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 176 254 IPR000504 GO:0003723
Ssu7g2659 261 SMART rrm1_1 177 250 IPR000504 GO:0003723
Ssu7g2659 261 SMART rrm1_1 78 151 IPR000504 GO:0003723
Ssu7g2659 261 MobiDBLite consensus disorder prediction 56 75 - -
Ssu7g2659 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 178 247 IPR000504 GO:0003723
Ssu7g2659 261 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 149 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2659 Ssu-Chr7 53135065 53136997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2659 63 256 Eukaryotic Initiation Factors Gene Family AT3G16380 30.653 6.64e-19 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2659 - - gmx:100789843 390.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0779 4 12016456 12023279 Ssu7g2659 7 53135065 53136997 PCT