LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu7g2656	ATGAACGACTTGTTCTCCGGCTCCTTCTCCCGCTTCAGCAACAACGACCAAGTCTCGCCGGACCACCACCACGTGATCGAGATGGGGGCGGCGAAGTCTTCGTCGTCGCCGCCGGCGGAGGGCGGCGTGAACTTGGAGAAGTTCTTCGAGGAAGTCGAGTGGGTGAAGGAGGAGCTGAAGGAGCTGGACCGCCTCCACGAGAGCTTGCGTGGGTCCCACGAGAAGAGCAAGACCCTCCACAGCGCCAAGGCCGTGAAGGAGCTTCGCTCGCGCATGGACGCTGACGTGGCGCTCGCGCTTAAAAGAGCGAAGCTCGTCAAGGTCCGGCTCGAGGCGCTGGACCGGTCCAACGAGTCGAGCCGAAATTTGCCCGGCTCGGGAGCCGGTTCGTCCTCGGACCGAACCAGGACGTCCGTGGTGAGCGGACTGAGAAAGAAGCTGAAGGACTCGATGGACAGCTTCAACAGCCTCAGACAACAGATATCGTCGGAGTATAGAGAAACTGTGCAGCGTAGATATTACACCGTCACGGGAGAGAACCCCGATGACAAAACCATTGACCTCCTCATTTCTACTGGTGAGAGTGAAACATTCTTGCAGAAAGCCATCCAGCAACAAGGGAGAGCCAGCGTGATGGACACGATCCAAGAGATTCAAGAGAGGCACGACACGgtgaaagagatagagagaaatctGAACGAGCTTCACCAAGTGTTCTTGGACATGGCCGTGTTGGTGCAAACCCAGGGTGAACAACTAGACGACATCGAGAGCCACGTGGCGCGCGCCAATTCGTACGTGAGGGGTGGGGTCCAGCAGTTGCACGTTGCAAGGAAGCACCAGAAGAACACCCGAAAGTGGACCTGCATCGCCATCATACTGCTCCTCATCATCATCTTGGTTATAGTTCTCCCTATAGTCCTAAGAAACTGA	933	0.5563	MNDLFSGSFSRFSNNDQVSPDHHHVIEMGAAKSSSSPPAEGGVNLEKFFEEVEWVKEELKELDRLHESLRGSHEKSKTLHSAKAVKELRSRMDADVALALKRAKLVKVRLEALDRSNESSRNLPGSGAGSSSDRTRTSVVSGLRKKLKDSMDSFNSLRQQISSEYRETVQRRYYTVTGENPDDKTIDLLISTGESETFLQKAIQQQGRASVMDTIQEIQERHDTVKEIERNLNELHQVFLDMAVLVQTQGEQLDDIESHVARANSYVRGGVQQLHVARKHQKNTRKWTCIAIILLLIIILVIVLPIVLRN	310

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu7g2656	310	Coils	Coil	45	65	-	-
	Ssu7g2656	310	PANTHER	SYNTAXIN	12	305	IPR045242	-
	Ssu7g2656	310	MobiDBLite	consensus disorder prediction	115	138	-	-
	Ssu7g2656	310	Gene3D	-	43	175	-	-
	Ssu7g2656	310	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	215	277	IPR000727	-
	Ssu7g2656	310	Pfam	Syntaxin	47	250	IPR006011	GO:0016020
	Ssu7g2656	310	ProSitePatterns	Syntaxin / epimorphin family signature.	221	260	IPR006012	GO:0005484\|GO:0006886\|GO:0016020
	Ssu7g2656	310	SMART	SynN_4	40	166	IPR006011	GO:0016020
	Ssu7g2656	310	Pfam	SNARE domain	251	303	IPR000727	-
	Ssu7g2656	310	CDD	SynN	45	202	IPR006011	GO:0016020
	Ssu7g2656	310	SMART	tSNARE_6	210	277	IPR000727	-
	Ssu7g2656	310	SUPERFAMILY	t-snare proteins	43	270	IPR010989	GO:0016020\|GO:0016192
	Ssu7g2656	310	PANTHER	SYNTAXIN OF PLANTS 122 PROTEIN	12	305	-	-
	Ssu7g2656	310	Gene3D	-	204	308	-	-
	Ssu7g2656	310	CDD	SNARE_syntaxin1-like	214	274	-	-
	Ssu7g2656	310	MobiDBLite	consensus disorder prediction	117	138	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu7g2656	Ssu-Chr7	53100996	53103308	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu7g2656	41	289	SNARE and Associated Proteins	AT3G11820	75.904	1.27e-140	398

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu7g2656	7	53100996	53103308	Ssu7g2656	7	53100996	53103308	ECH
	Ssu4g0782	4	12039812	12041730	Ssu7g2656	7	53100996	53103308	PCT