Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2655 atgaaCGACCTGTTTGCCGGCTCGTTCTCTCGCTTCCGCGGCGACCAGCCCTCGCCAGACCGCCACCACGTGATCGAGATGTCCGCCGCTGGAGGCGGCGGCGTCGGCCGCGGCGGAGAAGTGAACCTGAGCAAGTTCTTCGAGGACGTGGAGGGCGTGAAGGAGGAGTTAAAAGAGCTGGAGGGGTTGGCGCAGAGTCTGAAGAGAAGCCACGAGGAGAGCAAGACGGTGCACAACGCGAAGGCCGTGAAGGACCTTCGGTCGCGCATGGACGGCGACGTTTCGGTGGCCCTGAAGAAGGCGAAGCTCGTCAAGCTGAAGCTGGAGGCGCTGGAGCGGTCCAACGCCGCGAACCGGAACCTGCCCGGGTGCGGACCCGGTTCGTCCTCGGACCGGACCCGGACCTCCGTGGTCAACGGGCTCAAGAAGAAGCTGAGGGACTCCATGGAGGGCTTCAACGAGATCCGCCAGCTCGTCTCGTCGGAGTACCGCGAGACCGTGCAGCGCCGCTACTTCACCGTAACCGGCGAGAACCCCAATGACAAGACCCTCGATCTCTTGATCTCCACCGGTGAGAGTGAGACCTTCCTTCAGAAAGCCATTCAAGAGCAAGGCAGGGGTAGAATTCTGGACACCATCAATGAGATTCAAGAGAGGCATGATGCTGTCAAAGAGTTGGAGAAGAGTCTCAAGGAGTTGCACCAAGTGTTCCTTGACATGACAGTGCTGGTGCAACATCAAGGTGAGCAATTGGATGATATTGAAAGCCATGTGGCAAGAGCTCATTCGTTTGTGCGCACTGGAGCTGAGGAGTTGCAGACTGCACGGAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATTGTATCATACTTCTTCTGGTTATTATCTTGTTTGTGGTGCTCTTCACTGTGAGGCCGTGGGAACATAGCAgtagtggtggcaatggtggtggaagTCAGCCTGCGCCACCTCCCCCGCCTGTTAATGCTTAA 996 0.5592 MNDLFAGSFSRFRGDQPSPDRHHVIEMSAAGGGGVGRGGEVNLSKFFEDVEGVKEELKELEGLAQSLKRSHEESKTVHNAKAVKDLRSRMDGDVSVALKKAKLVKLKLEALERSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLRDSMEGFNEIRQLVSSEYRETVQRRYFTVTGENPNDKTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKELEKSLKELHQVFLDMTVLVQHQGEQLDDIESHVARAHSFVRTGAEELQTARKHQKNTRKWTCYCIILLLVIILFVVLFTVRPWEHSSSGGNGGGSQPAPPPPPVNA 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2655 331 MobiDBLite consensus disorder prediction 1 20 - -
Ssu7g2655 331 Gene3D - 209 306 - -
Ssu7g2655 331 Pfam SNARE domain 249 301 IPR000727 -
Ssu7g2655 331 SMART tSNARE_6 208 275 IPR000727 -
Ssu7g2655 331 Pfam Syntaxin 45 248 IPR006011 GO:0016020
Ssu7g2655 331 Gene3D - 40 173 - -
Ssu7g2655 331 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 7 312 - -
Ssu7g2655 331 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 213 275 IPR000727 -
Ssu7g2655 331 Coils Coil 43 73 - -
Ssu7g2655 331 ProSitePatterns Syntaxin / epimorphin family signature. 219 258 IPR006012 GO:0005484|GO:0006886|GO:0016020
Ssu7g2655 331 CDD SNARE_syntaxin1-like 212 274 - -
Ssu7g2655 331 MobiDBLite consensus disorder prediction 311 331 - -
Ssu7g2655 331 Coils Coil 213 233 - -
Ssu7g2655 331 CDD SynN 43 200 IPR006011 GO:0016020
Ssu7g2655 331 PANTHER SYNTAXIN 7 312 IPR045242 -
Ssu7g2655 331 SMART SynN_4 38 164 IPR006011 GO:0016020
Ssu7g2655 331 SUPERFAMILY t-snare proteins 41 268 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2655 Ssu-Chr7 53080186 53082766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2655 35 328 SNARE and Associated Proteins AT3G11820 72.697 3.73e-150 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2655 K08486 - gmx:100809258 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0783 4 12048909 12051045 Ssu7g2655 7 53080186 53082766 PCT