Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2649 ATGGACGAGATCGACGTGCCTCCGTTCTTCGTGTGCCCCATTTCCCTCGACCTCATGAAGGACCCCGTAACGGTCCCCACGGGGATCACCTACGACCGCGACAGCATCGAGAAATGGCTCTTCGCCTCCAAAAACGACACGTGTCCCGTCACGAAGCAGCCCCTGCTCCCGGACCTCACTCCGAACCACACCCTCCGCAGACTCATCCAAGCCTGGTGCACCGTCAACGCCTCCCACGGCATCCAAAGAATCCCGACGCCAAAACCCCCCGTCGACAAGACCATGGTCGAAAAACTCCTCAAAGACGCTTCGGAGTCCCCGAACCTCCAGCTCCGGTGCCTCCGAACCCTCAAATCCATCGCCTCGGAATCCCAAACCAACAAACGCTGCGTGGAATCCGCAGGGGCGGTTGAGTTCTTAGCATCTGTCGTTACCACCACTATTGCCACTGCCACCAACTCCTGTCTAGAAGACGACGTGGAGTTGGAGTTAAAAACAAGTGCAGCCGACGAAGCGCTCAGCCTATTACATGGCATTCATTTATCCGAGTCAGGTTTCAAGTATCTAGTGAATCACGGACACTTTATAAACTCTTTAACAATAATCATGCAGAGGGGAATCTACGAGTCCCGCGCTTACGCAGTCTTATTATTGAAATCCATGTCCGAGGTGGCCGATCCCGCGCAGTTGATTAACCTAAAAGCCGAAATGTTTATTGAACTGGTTCAAGTTCTGAAGGACCAGATTTCGCAGAAGGCTTCGAAAGCGACACTTCAGACATTAATCCAAGTCTGTCCGTGGGGGAGGAATAGGGTGAAGGCGGTGGAGGCAGGGGCGGTTCCGGTGCTCGTCGAGCTTCTTCTCGATTGCAAGGAGAGGAAACCGTGCGAGATGATGCTGGTTTTGCTGGAGACTCTGTGTCAGAGTGCTGATGGGCGCGCGGGGCTGTTGGCGCACGCGGCGGGATTGGCGATTGTGGCGAAGAAGATCCTGAGGGTGTCCACGATGGCGAACGATAGGGCCGCGAAGATTCTCCTGAATGTTTGTAGATTCTCCGCCGCGCCGAACGTGCTGCAGGAGATGGTGCAGCTGGGGGTGGTGGCGAAGCTGTGTCTGGTGCTGGAGGTGGATAGTGGGAACAAGGCGAAGGAGAAGGCGAGGGAGATTCTCAAACTGCACGCGAGGGCGTGGAGGAACTCGCCGTGTATACCTGCGAATTTGCTTGCTTCGTACCCAACAAGTGcgtga 1248 0.5521 MDEIDVPPFFVCPISLDLMKDPVTVPTGITYDRDSIEKWLFASKNDTCPVTKQPLLPDLTPNHTLRRLIQAWCTVNASHGIQRIPTPKPPVDKTMVEKLLKDASESPNLQLRCLRTLKSIASESQTNKRCVESAGAVEFLASVVTTTIATATNSCLEDDVELELKTSAADEALSLLHGIHLSESGFKYLVNHGHFINSLTIIMQRGIYESRAYAVLLLKSMSEVADPAQLINLKAEMFIELVQVLKDQISQKASKATLQTLIQVCPWGRNRVKAVEAGAVPVLVELLLDCKERKPCEMMLVLLETLCQSADGRAGLLAHAAGLAIVAKKILRVSTMANDRAAKILLNVCRFSAAPNVLQEMVQLGVVAKLCLVLEVDSGNKAKEKAREILKLHARAWRNSPCIPANLLASYPTSA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2649 415 Pfam U-box domain 6 75 IPR003613 GO:0004842|GO:0016567
Ssu7g2649 415 PANTHER WDSAM1 PROTEIN 1 412 IPR045185 GO:0061630
Ssu7g2649 415 SMART Ubox_2 9 72 IPR003613 GO:0004842|GO:0016567
Ssu7g2649 415 Gene3D - 92 400 IPR011989 -
Ssu7g2649 415 SUPERFAMILY ARM repeat 98 398 IPR016024 -
Ssu7g2649 415 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 412 - -
Ssu7g2649 415 ProSiteProfiles U-box domain profile. 5 79 IPR003613 GO:0004842|GO:0016567
Ssu7g2649 415 SUPERFAMILY RING/U-box 3 80 - -
Ssu7g2649 415 CDD RING-Ubox_PUB 10 53 IPR045210 -
Ssu7g2649 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2649 Ssu-Chr7 52984792 52986039 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2649 2 412 U-box Gene Family AT2G35930 56.459 7.33e-171 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2649 - - gmx:100795263 663.299
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2649 7 52984792 52986039 Ssu7g2649 7 52984792 52986039 ECH
Ssu7g2649 7 52984792 52986039 Ssu4g0787 4 12152293 12153501 PCT