Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2648 ATGGACGAAATTGAAGTCCCTCAATACTTCATCTGCCCAATATCCCTCCAAATCATGAAGGACCCCGTCACGGCCATAACGGGCATAACATACGACCGAGAAAGCATTGAGCACTGGCTATTCACCAACCAGAACACCACATGCCCCGTAACCAAACAACCCCTCCCAAGAGACTCTGACCTAACCCCTAACCACACCCTTCGCCGATTAATCCAAGCTTGGTGCACCCAAAACGCTTCACTAGGCATCGATCGCATTCCAACCCCAAAACCCCCACTCAACAAAATCCAAGTCCTCAAACTCCTCAAAAACCTCAACGACCCCAAAAGCCTCATGCAATTGGAGCTTCTTGCGGCGCAGAACGAGCGGAACAAAAAGTGCTTGCTAGAAGCCGGCGTACCAAAAGCCATGATCATGTTCATCGTGAATTGTTACAAAAAAGGCCAAATCCAAAAGGGTCTCGAAGAAGTTCTTAGCATATTGCAATTCATCAAGATCCCCGCTGAAGAATGCCCGCTGCTTTTAAAGGAAAACGACCAAATATTGGATTCTCTAACATGGGTTCTAAGCCTTGACGAAGTGGAAAACTCTGTTGCCGTGAAATCACACGCCCTTTTAGTGCTAAAAAAATTCGCCAACAAGGGCGACACGTGTCACGTTCTCGAGAGACTCAAGCCCGAGTTCTTCGAAAGAATCGTGAAGATTCTAAGACACGGGGTGACCCAGCAAGGGTTGAGTGCAGCACTTCAAGTTCTTTTAAGTGCTTGTCCCTGGGGGCGAAACAGGATCATGATGGTGGAAGCTGGTTTGGTTTACGAGCTCGTCGAGATTGAACTAGGGGCACCGGAGAAGAGAGTCACGGAACTCACGCTGGCTATATTGTTTCATTTGTGTTCCTGTGCCAACGGGAGAGCCAAGTTTCTGAGCCACGAAGGGTCCATCGCGGTGGTGACGGAGAGGATATTGAAGGTTTCGGCGGCGGTGGATGACAGAGCCGTGTTTGTGCTCTCGCTGGTTTCGAAGTTTTCGGGCACGAACGCGGTGCCGCAGGAGATGCTGAAGGCGGGAACCGTGGTGAAGCTTTGCATGTTGCTTCAGGCTGATCATGCAAAGTACTTGAAGGACAAAGCAATGGAAATACTCAAGGCTCACTCTGAGacCATCTTTTCAGAAATGTCAAGCGTGGGAATTCTAGACTTGCACTACAAGGGAAgttgcaggactgcgctggcggtctgttcttctgaaccttcttcatttgtcttgtcagcttga 1275 0.4682 MDEIEVPQYFICPISLQIMKDPVTAITGITYDRESIEHWLFTNQNTTCPVTKQPLPRDSDLTPNHTLRRLIQAWCTQNASLGIDRIPTPKPPLNKIQVLKLLKNLNDPKSLMQLELLAAQNERNKKCLLEAGVPKAMIMFIVNCYKKGQIQKGLEEVLSILQFIKIPAEECPLLLKENDQILDSLTWVLSLDEVENSVAVKSHALLVLKKFANKGDTCHVLERLKPEFFERIVKILRHGVTQQGLSAALQVLLSACPWGRNRIMMVEAGLVYELVEIELGAPEKRVTELTLAILFHLCSCANGRAKFLSHEGSIAVVTERILKVSAAVDDRAVFVLSLVSKFSGTNAVPQEMLKAGTVVKLCMLLQADHAKYLKDKAMEILKAHSETIFSEMSSVGILDLHYKGSCRTALAVCSSEPSSFVLSA 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2648 424 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Ssu7g2648 424 Gene3D - 97 421 IPR011989 -
Ssu7g2648 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 82 IPR013083 -
Ssu7g2648 424 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Ssu7g2648 424 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Ssu7g2648 424 PANTHER WDSAM1 PROTEIN 3 387 IPR045185 GO:0061630
Ssu7g2648 424 CDD RING-Ubox_PUB 10 53 IPR045210 -
Ssu7g2648 424 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB24 3 387 - -
Ssu7g2648 424 SUPERFAMILY RING/U-box 3 83 - -
Ssu7g2648 424 SUPERFAMILY ARM repeat 100 382 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2648 Ssu-Chr7 52933115 52936524 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2648 2 384 U-box Gene Family AT3G11840 43.619 1.65e-114 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2648 - - gmx:100798446 638.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2648 7 52933115 52936524 Ssu7g2648 7 52933115 52936524 ECH
Ssu4g0787 4 12152293 12153501 Ssu7g2648 7 52933115 52936524 PCT