Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2644 ATGGCTATTTCTTTtgcGAAGAAGgaacaaagcaaaagaaattatttttctccGATGGCGACATATTTCCATAGTAACTCCGAAATTCAAGCCGGTGCCGATGGCCTTCAAACTCTCGTACTAATGAACCCCGGCTACGTCCAATACTCCGACACGCCGCCGCCACCCCACGGCGGAAACCTCATGTTCCTCAACTCCGTCGCCACCTCCCTGCAAAGCCTCCCCCACGCGCCGCCCCCCCACACCCAGCAATTCGTGGGCGTGCCGCTCTCGGCGGCCGGGCAGGAGCAGCCGCCGTCCATGCACCACGACCTCTCCGCCTTGCATGGCTTCCTGCCGCGCATGCAGTACAACCTCTGGAACACGGTTGACCACAACGCGGCGGCGCGTGAGACTCCACGCGCCACCCAGGGGCTGTCCCTGAGCCTGCACGGCGACGACGTGCGCGCGTCGTCGTCCTCCGCCTCGGGGGCCTCCAACGGCGGCGGCGTGGCGGGGATTCAGAGCGTGCTCTTGAGTTCCAAGTACTTGAAGGCCACGCAGGAACTTCTCGACGAGGTTGTCAACGTTAACGGCGGGATTAAGGTCGAACAGGCGAAGAAGAGCTTCGACAAAACTAAGGTGGTTGGGGAATCATCAACGGCAGCTAGCGGTGACGGTTCAGTTGGTGGCGAGGGAAGTGGGAAACGTAGCTCTGAATTGTCAACAAATGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATGAACATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACAGCCAGATGCAGGTTGTGATATCCTCTTTTGAGCAAGCTGCGGGGATTGGTTCTGCGAGGACGTACACTGCGCTTGCACTGCAAACAATTTCAAAGCAATTTCGGTGTTTGAAGGATGCTATAACGGGGCAAATTAGAGCTGCAAATAAGAGTTTGGGAGAAGAGGATTCTTTTGGGGGTAAAATGGAAGGTTCTAGGCTCAAATATGTGGACCACCATCTACGGCAACAGAGAGCTATCCAACAGTTGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTCCTACGTGCTTGGCTCTTTGAACACTTCCTCCACCCTTACCCCAAAGACTCAGACAAACACATGCTTGCAAAACAAACAGGGCTTACCAGGAGCCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAGATGAAAGAGCACGAACTAAATGGATCTGAGGAGAAATCAAGCAAAAGTGGTGAAGATCCTGCCATGAAAACCACAACTCCACAAGAAAAACGTCCCACCTCTGAAATTGAATCTAAAAGTTTCAACTCCAAACAAGATGTTTCTAAAAACCAGAACACTCCAATAGTTTCAACTTCTCCACCATCAACATCACGTATTGGGGGAAATGTTAAGAATCAATCAGGGTTCAGCTTCATGGGGTCATCAGAGCTAGATGGAATCACACAAGGAAGTCCCAAGAAACCAAGGAACCATGAAATTCTTCACTCTCCAAATCGTGTCCCTTCAATCAACATGGATGTCAAAGCTAATGAGGCAAACAATGAACAACTCTCAATGGACGAGAGGCAGAGCAGGGATGGGTACTCTTTCATGGGGAACCAAACAAACTTCATTAGTGGTTTTGGGCAATACCCAATGGAGGAAATTGGTAGGTTTGATGCTGAGCAATTCACACCAAGGTTTCCAGGGAATGGGGTTTCCCTCACTCTTGGTCTTCCTCATTGTGACACATTGTCCGGAACCCACCAAACCTTTCTCCCAAACCAAAACATTCAATTAGGAAGAGGGTTGGACATTGGTGAACCAAACCAGTTTGGTGCTTTAAATAATTCTACTTCTCACTCTTCAGCAGCATTTGAGAGTATCAACATGCAGAACCCAAAGAGGTTTGCTGCACAATTGCTGCCAGACTTTGTGGCCTAA 2016 0.4936 MAISFAKKEQSKRNYFSPMATYFHSNSEIQAGADGLQTLVLMNPGYVQYSDTPPPPHGGNLMFLNSVATSLQSLPHAPPPHTQQFVGVPLSAAGQEQPPSMHHDLSALHGFLPRMQYNLWNTVDHNAAARETPRATQGLSLSLHGDDVRASSSSASGASNGGGVAGIQSVLLSSKYLKATQELLDEVVNVNGGIKVEQAKKSFDKTKVVGESSTAASGDGSVGGEGSGKRSSELSTNERQEIQMKKAKLMNMLDEVEQRYRQYHSQMQVVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEEDSFGGKMEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHELNGSEEKSSKSGEDPAMKTTTPQEKRPTSEIESKSFNSKQDVSKNQNTPIVSTSPPSTSRIGGNVKNQSGFSFMGSSELDGITQGSPKKPRNHEILHSPNRVPSINMDVKANEANNEQLSMDERQSRDGYSFMGNQTNFISGFGQYPMEEIGRFDAEQFTPRFPGNGVSLTLGLPHCDTLSGTHQTFLPNQNIQLGRGLDIGEPNQFGALNNSTSHSSAAFESINMQNPKRFAAQLLPDFVA 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2644 671 SMART HOX_1 355 419 IPR001356 GO:0003677
Ssu7g2644 671 MobiDBLite consensus disorder prediction 427 528 - -
Ssu7g2644 671 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 143 623 - -
Ssu7g2644 671 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 24 132 - -
Ssu7g2644 671 MobiDBLite consensus disorder prediction 427 442 - -
Ssu7g2644 671 Pfam Homeobox KN domain 372 411 IPR008422 GO:0003677|GO:0006355
Ssu7g2644 671 Pfam Associated with HOX 170 306 IPR006563 -
Ssu7g2644 671 ProSiteProfiles 'Homeobox' domain profile. 352 415 IPR001356 GO:0003677
Ssu7g2644 671 MobiDBLite consensus disorder prediction 207 238 - -
Ssu7g2644 671 SMART prehox3 165 307 IPR006563 -
Ssu7g2644 671 Coils Coil 239 266 - -
Ssu7g2644 671 CDD homeodomain 355 416 IPR001356 GO:0003677
Ssu7g2644 671 SUPERFAMILY Homeodomain-like 356 422 IPR009057 -
Ssu7g2644 671 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 143 623 - -
Ssu7g2644 671 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 24 132 - -
Ssu7g2644 671 MobiDBLite consensus disorder prediction 462 512 - -
Ssu7g2644 671 Gene3D - 351 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2644 Ssu-Chr7 52884502 52888079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2644 19 671 Homeobox Transcription Factor Family AT2G35940 49.407 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Ssu7g2644 POX 6.2e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2644 - - gmx:100810851 1142.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2644 7 52884502 52888079 Ssu7g2644 7 52884502 52888079 ECH
Ssu4g0790 4 12183168 12185966 Ssu7g2644 7 52884502 52888079 PCT