Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2641 ATGGCACACCCTCGCGCGAGCCTCATGCCCTTTCTCCTCCTCTCCATCTCGACCCTCGTTTTCACTGACACCGACCCAAACGACGTGAAGATTCTAAACAGCTTCAGAAGAGGGTTGAAAAACCCGGAGCTCTTACCGTGGCCCGAAGAAGGAGGAGACCCGTGCGGGAACCCTCCCTGGAAATACATCTTCTGCAACGGCAACAGGGTCTCCCAGATTCAGACCAAAAACTTGGGCCTCGTGGGCCCGCTCCCTCCCAACCTCAACCAGCTCTCCATGCTGGAGAATCTGGGCCTGCAGAACAACAAGCTCAACGGGCCCTTGCCATCCTTCAACGGCTTATCAAACTTGCAATACGCGTTTCTCAACTTCAACGAGTTCGAATCCGTCCCCGAAGACTTCTCCGAGGGACTCCAGAGTCTCGAGGTGTTGGCGTTGGATTACAACAACCTCAATGCGAGCGCCGGCGGTTGGGGGCTTCCCTCCACGTTGGAGGGTTCGGCGCAGTTGAGGAACCTGTCGTGCATGAGCTGCAACTTGGTGGGTCCCATTCCCGCGTTTCTCGGCAACATGGCCTCGCTGTCGGTGCTGCAGCTCTCCGGGAACGGCTTGACCGGCGAGATTCCGGCGACGCTGAGCGCCGCCCCTGCGTTGCAGGTTCTGTGGCTGAACAACCAGCGCGGTAACGGACTCGCCGGGAAAATCGACGTCGTTGGAACCATGGTTTCTATAACGAGCTTGTGGCTTCACGGGAACAAGTTTGAAGGGACTATTCCGATGAACATTGGGGATTTGGTTTCTCTGAAGGATTTGAATCTCAATGGGAACGAGCTTGTCGGGTTAATTCCGAGTGGTTTGGGTGAAATGAAATTGGAGCGGTTGGATTTGAGTAATAACCGTTTCATGGGTCCGATCCCTGGTTTTGTAGCGAGTAAAGTGAGTTTTGGGAACAATGATTTTTGTGTGTCCAAGCCTGGGGTTATGTGTGCGTTTGAAGTGATGGTGTTGTTGGAGTTTCTCGGGGGGTTGGGTTATCCTGGGATTTTGGTTGATTCGTGGAGTGGGAATGACCCGTGTGATGGACCATGGTTGGGGATAAAGTGCAATGGGGAGGGAAAGGTGGAAATGATTGTTTTGAATAACTTTAATCTCAGTGGTACTTTGAGTCCTTCTGTTGCGAAGTTGGGTTCTCTTGTTGAAATAAGGTTGGCAGGTAATGATTTGAGTGGCGGGATACCGAGTAATTGGACTAGTTTGAGATCTTTGACATTGTTGGATCTGAGTGGGAATAACATTTCCCTTCCCTTGCCAAGTTTTGGGAAAGGATTGAAACTTGTAATTGATGGGAATCCTCAGTTAAGTGCTCCACAAGTTTCTCCACCAGGTTCTGGTGCTGGTTCTAGTTCCTCACCTATAAAAGGTAAACCTCCTTCAACTGATAAGCATAATCCTAATCCGTCCAAAGACTCTAGTCCCAATCCCAAGTCCAGTATTTCTCTTGAGTCAAATAATTCTTCCAGAGGGAAAAGCTTCGTTCCAATTGTGGTCCCTATTGCTGGTGTTGCAGCTGCAGCTTTTCTGCTCGTTCCGCTTTATGTGTACTGTTTCAGGAGGAGAAAGGGTGTGTCTGAGGGTGCAGGGTCACTAGTGATTCACCCTAGGGATCCTTCTGATTTGGACAATGTGCTGAAGATTGTTGTTGCTAACAACAGCAATGGGAGCGTTTCCATGGTGACTGGCTGTGGGTCTGGGACTCTGAATGGAAGTGGGGAGTCTCATGTCATTGAGGCTGGGAACCTTGTGATATCGGTTCAAGTTCTTCGAAATGTGACCAAGAATTTTGCACGGGAGAACGAGGTTGGGCGCGGTGGGTTTGGGGTTGTTTACAAGGGAGAATTGGATGACGGGACTAAAATTGCGGTGAAACGAATGGAATCGGGTGTGATTAGCAGAAAAGCCTTAGATGAGTTCCAGTCTGAGATTACAGTTCTATCAAAAGTCCGGCACCGGCATTTGGTGTCTCTTTTGGGTTATTCAGTTGAAGGTAATGAGAGGATTCTGGTTTATGAGTATATGCCACAAGGGGCTCTCAGTATGCATCTTTTCCATTGGAAGAGCTTGCAACTGGAGCCACTTTCTTGGAAGAGGAGGCTCAATATTGCCTTGGATGTTGCTAGAGGAATGGAGTACCTTCATAGTCTGGCTCACCAGATCTTCATTCACAGAGATCTTAAGTCATCAAATATTTTGCTTGGGGATGACTTTAGAGCAAAAGTCTCAGATTTTGGATTGGTAAAACTTGCTCCTGATGGCAAAAAATCTGTAGTGACCAGGCTTGCTGGTACATTTGGATACTTGGCACCAGAATATGcagTGACAGGAAAAGTCACTACCAAAGCAGATGTTTTCAGTTTCGGCGTTGTGCTAATGGAGCTGTTAACTGGACTAATGGCACTTGATGAGGATAGACCCGAGGAGAGCCAATACTTGGTGTCGTGGTTCTGGCATATAAAATCAGACAAGGAGAAACTAATGGCTGCTATTGACCCAGCCCTTGACATAAAGGAAGAAACGTTCGATAGCGTCTCCGTCATTGCTGAGTTAGCTGGGCACTGCACTGCCAGAGAACCAAACCAAAGGCCAGATATGAGTTATGCTGTGAATGTTCTTGCACCGCTTGTTGAAAAATGGAAACCATTAGATGATGAAACTGAGGAGTATTGTGGCATAGATTATAGTCTTCCCCTTAACCAAATGGTGAAGGACTGGCAGGAGACAGAAGGAAAGGACTTGAGCTATGTGGACCTACAAGACAGTAAGAGTAGTATCCCTGCAAGGCCTACTGGATTTGCAGAGTCTTTCACTTCTGCCGATGGCCGGTGA 2883 0.4842 MAHPRASLMPFLLLSISTLVFTDTDPNDVKILNSFRRGLKNPELLPWPEEGGDPCGNPPWKYIFCNGNRVSQIQTKNLGLVGPLPPNLNQLSMLENLGLQNNKLNGPLPSFNGLSNLQYAFLNFNEFESVPEDFSEGLQSLEVLALDYNNLNASAGGWGLPSTLEGSAQLRNLSCMSCNLVGPIPAFLGNMASLSVLQLSGNGLTGEIPATLSAAPALQVLWLNNQRGNGLAGKIDVVGTMVSITSLWLHGNKFEGTIPMNIGDLVSLKDLNLNGNELVGLIPSGLGEMKLERLDLSNNRFMGPIPGFVASKVSFGNNDFCVSKPGVMCAFEVMVLLEFLGGLGYPGILVDSWSGNDPCDGPWLGIKCNGEGKVEMIVLNNFNLSGTLSPSVAKLGSLVEIRLAGNDLSGGIPSNWTSLRSLTLLDLSGNNISLPLPSFGKGLKLVIDGNPQLSAPQVSPPGSGAGSSSSPIKGKPPSTDKHNPNPSKDSSPNPKSSISLESNNSSRGKSFVPIVVPIAGVAAAAFLLVPLYVYCFRRRKGVSEGAGSLVIHPRDPSDLDNVLKIVVANNSNGSVSMVTGCGSGTLNGSGESHVIEAGNLVISVQVLRNVTKNFARENEVGRGGFGVVYKGELDDGTKIAVKRMESGVISRKALDEFQSEITVLSKVRHRHLVSLLGYSVEGNERILVYEYMPQGALSMHLFHWKSLQLEPLSWKRRLNIALDVARGMEYLHSLAHQIFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGKKSVVTRLAGTFGYLAPEYAVTGKVTTKADVFSFGVVLMELLTGLMALDEDRPEESQYLVSWFWHIKSDKEKLMAAIDPALDIKEETFDSVSVIAELAGHCTAREPNQRPDMSYAVNVLAPLVEKWKPLDDETEEYCGIDYSLPLNQMVKDWQETEGKDLSYVDLQDSKSSIPARPTGFAESFTSADGR 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2641 960 Gene3D Phosphorylase Kinase; domain 1 585 691 - -
Ssu7g2641 960 PANTHER OSJNBA0070M12.3 PROTEIN 3 960 - -
Ssu7g2641 960 MobiDBLite consensus disorder prediction 452 506 - -
Ssu7g2641 960 ProSiteProfiles Protein kinase domain profile. 614 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2641 960 MobiDBLite consensus disorder prediction 940 960 - -
Ssu7g2641 960 Pfam Protein tyrosine and serine/threonine kinase 617 888 IPR001245 GO:0004672|GO:0006468
Ssu7g2641 960 SMART serkin_6 614 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2641 960 SUPERFAMILY L domain-like 332 443 - -
Ssu7g2641 960 SUPERFAMILY Protein kinase-like (PK-like) 592 898 IPR011009 -
Ssu7g2641 960 Gene3D Transferase(Phosphotransferase) domain 1 692 909 - -
Ssu7g2641 960 Gene3D Ribonuclease Inhibitor 332 457 IPR032675 -
Ssu7g2641 960 Gene3D Ribonuclease Inhibitor 25 327 IPR032675 -
Ssu7g2641 960 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Ssu7g2641 960 Pfam Leucine rich repeat N-terminal domain 335 369 IPR013210 -
Ssu7g2641 960 ProSitePatterns Serine/Threonine protein kinases active-site signature. 739 751 IPR008271 GO:0004672|GO:0006468
Ssu7g2641 960 SMART LRR_typ_2 265 289 IPR003591 -
Ssu7g2641 960 SMART LRR_typ_2 114 137 IPR003591 -
Ssu7g2641 960 SMART LRR_typ_2 419 442 IPR003591 -
Ssu7g2641 960 SMART LRR_typ_2 138 161 IPR003591 -
Ssu7g2641 960 SMART LRR_typ_2 191 215 IPR003591 -
Ssu7g2641 960 ProSitePatterns Protein kinases ATP-binding region signature. 620 642 IPR017441 GO:0005524
Ssu7g2641 960 CDD STKc_IRAK 620 893 - -
Ssu7g2641 960 PANTHER RECEPTOR PROTEIN KINASE TMK1-LIKE 3 960 - -
Ssu7g2641 960 SUPERFAMILY L domain-like 24 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2641 Ssu-Chr7 52731770 52735290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2641 80 895 Receptor kinase-like Gene Family AT5G07280 31.849 1.62e-80 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Ssu7g2641 PK_Tyr_Ser-Thr 4.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2641 - - gmx:100781857 1556.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2641 7 52731770 52735290 Ssu7g2641 7 52731770 52735290 ECH
Ssu4g0793 4 12335824 12338178 Ssu7g2641 7 52731770 52735290 PCT