Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2631 ATGAGAACGGGAAGCTGCGCTGTGCAACAGGGTCTAACCCCAGAAGCCGCAAGCATAGTGAAGCAAGCAGTGACACTGGCGAAGCGTCGTGGCCACGCGCAAGTGACACCCCTCCACGTGGCAAACACCATGCTCGCCGTCACCAACGGGCTTCTGAGAACCGCGTGTCTCCAATCCCACTCTCACCCTCTTCAGTGCAAGGCCCTGGAGCTTTGCTTCAACGTTGCGCTGAATCGGTTACCAGCTTCAACCTCTTCGAGCCCCATGTTGCAAGGttctcaccaccaccactcTCACGCGTGTCCCTCTATCTCAAACGCTTTGGTCGCTGCTTTCAAGCGCGCTCAAGCACACCAACGACGTGGATCCATCGAGAACCAGCAACAACCCCTTTTGGCAGTGAAAATAGAACTCGAGCAACTCATTATTTCGATCTTGGATGACCCTAGTGTTAGCCGAGTCATGAGAGAGGCCGGGTTCTCTAGCACTCAAGTTAAAAGCAACGTTGAACAAGCGGTGTCTTTGGAAATATGCTCTCAGAATAACGGTAACGGTAGTGATAGTAATAAGGCAAAGGAAAACAATAGTAGTGGAGAGAACGTGGGCAACAAAGGGTTGGTGTTGGATCCCATTAGGGGTGAGGATGTCGCTAGTGTTATTGATAATTTGGGGAGCGGGAGAAGGAGAAGTGTTGTGATTGTGGGAGAGTGTGTTACTAGTCTTGAGGGTGTAGTTAGGGGAGTGATGGAAAAGGTTGATAAAGGGGATGTTGGGGAGTGTCTTAGGGGTGTCAAGTTCATCTCTCtgtctctttcttcttttgggAATGTTTCAAGAGTGGAGGTCGAGCAAAAGGTTGAAGAGCTTTGGAGTCTCGTGAAGGAAAGTGAGCATAGCAAAGGGTATGTTTTGTATTTGGGAGATCTTAAATGGGTGTTTGATTATAGGGCTCGTGGATCGCAAGGGAGAGCGTGTTATTGTCCTGTGGATCACATGGTAATGGAGATTGGGAAGCTGGTGAGTGGGGTTGAAGAGAATGGTGGAAGGTTTTGGGTGATGGGTGTTGCCACTTTTCAAGCTTACATGAGATGCAAAAATGGCCAGCCATCGTTGGAGACTCTTTGGGCTCTTCATCCTGTTACTATTCCTGCGGGAAGCTTGCGCTTGAGTCTTATCACAGACAGTGGTCTACAAAACCAGCCCACAAACAAGAAAGCTGACAACAGACCTAGCTGGCTCTTACTCGAAGGAGTGGGGGATGATCAGAAACAACAAGCATGCTTCGCGGAAACTTCCACCAAGAATGAGACCGAAGTTCGAAGCTTGCAAAGCAGTACTTGTAATAGCGATTCCTCAAGTTCAACCCTTCCTGCATGGCTCCAACAGtacaaaaatgagaataaaggAATCAGCTATAATGATCAGAACTGTGTCCCAGTGGGAGAGCTTTGCAAAAAGTGGAACTCTATGTGTAGTCCAATCCAAAAGCAACCTTATCCTTCAGACATAACCCTCACATTATGCTCGGCATCACCTTCTTCCTCAACCTCAGGCTTCTCATACGAACAACAACACCCTAATCTGCACCAAACCCATCACGAGTGGCAACCCAAAGACTCACTGAGCAACCACAGTTTCTGGATCCCAAACAATGGTACCAACCCCAATGAACCCACTTTGAGAGTGTACATTCCAGAGAAGAAGGACGCCACTAAGCAACCGTTCTCATCACCAAACCCAAGTTCCAACCCTAATTCCACTTCCTCCAGTGACATCATGGAAGTGGAGCACGTGAGCAAGTTCAAAGAGCTCAACTCAGAGAACCTGAAAACACTGTGCAATGCTTTGGTGAAAAAAGTGCCGTGGCAGAAAGACATAATACCAGAAATTGCGAGCACCGTTTTGCAATGCCGCTCTGGCATGGtaagaagaaaagggaaagtGAGAAACAGTAGTGAAGTGAAAGAAGAAACGTGGTTGTTTTTCCAAGGTGTTGATGCGGAAGCTAAAGAGAAAATAGCAAGAGAACTGGCTCGGCTTGTTTTCGGGTCCCACAACGACGTCGTTTCTATAACACTAAGCAGCTTCGCATCCACAAGAGCAGATTCAACCGAGGATTATAGCAGGAACAAAAGATCAAGAGAAGAAGCAAGTTGCAGTTACATTGAGAGGTTCAAAGAAGCTATCTCTACTAACCCTCATAGGGTGTTTCTAGTTGAAGATATAGAGCAAGCGGATTATTGTTCTCAGCTTGGTTTCAAGAGGGCCATTGAGAGAGGAAGAGTTGCGGATTCGAACGGTGAAGAGGTTGCACTTGGTGACGCTATCATCATTCTAAGCTGCGAAAGTTTCAGTTCAAGGTCAAGGGCTTGTTCTCCTTCGGTCGAACAAAAATCGTTGACCGAAGAGGAAAAGAATGGTGACATTGCCACTCTGGAGGAGACAAGCCCTTGTGTTACTTTGGATTTGAATATTTCCATTGATGATGAAAACGAGGTTGAGGATCGGTCGGTGGATGAAATTGGGCTTCTTGAATCCGTGGACAGAAGGGTCATCTTCAACTTTCAGGAATTGTGA 2577 0.4606 MRTGSCAVQQGLTPEAASIVKQAVTLAKRRGHAQVTPLHVANTMLAVTNGLLRTACLQSHSHPLQCKALELCFNVALNRLPASTSSSPMLQGSHHHHSHACPSISNALVAAFKRAQAHQRRGSIENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQNNGNGSDSNKAKENNSSGENVGNKGLVLDPIRGEDVASVIDNLGSGRRRSVVIVGECVTSLEGVVRGVMEKVDKGDVGECLRGVKFISLSLSSFGNVSRVEVEQKVEELWSLVKESEHSKGYVLYLGDLKWVFDYRARGSQGRACYCPVDHMVMEIGKLVSGVEENGGRFWVMGVATFQAYMRCKNGQPSLETLWALHPVTIPAGSLRLSLITDSGLQNQPTNKKADNRPSWLLLEGVGDDQKQQACFAETSTKNETEVRSLQSSTCNSDSSSSTLPAWLQQYKNENKGISYNDQNCVPVGELCKKWNSMCSPIQKQPYPSDITLTLCSASPSSSTSGFSYEQQHPNLHQTHHEWQPKDSLSNHSFWIPNNGTNPNEPTLRVYIPEKKDATKQPFSSPNPSSNPNSTSSSDIMEVEHVSKFKELNSENLKTLCNALVKKVPWQKDIIPEIASTVLQCRSGMVRRKGKVRNSSEVKEETWLFFQGVDAEAKEKIARELARLVFGSHNDVVSITLSSFASTRADSTEDYSRNKRSREEASCSYIERFKEAISTNPHRVFLVEDIEQADYCSQLGFKRAIERGRVADSNGEEVALGDAIIILSCESFSSRSRACSPSVEQKSLTEEEKNGDIATLEETSPCVTLDLNISIDDENEVEDRSVDEIGLLESVDRRVIFNFQEL 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2631 858 MobiDBLite consensus disorder prediction 572 591 - -
Ssu7g2631 858 MobiDBLite consensus disorder prediction 540 558 - -
Ssu7g2631 858 MobiDBLite consensus disorder prediction 180 202 - -
Ssu7g2631 858 Gene3D - 208 383 IPR027417 -
Ssu7g2631 858 Gene3D - 587 824 IPR027417 -
Ssu7g2631 858 PANTHER PROTEIN SMAX1-LIKE 3 1 857 - -
Ssu7g2631 858 Pfam Clp amino terminal domain, pathogenicity island component 136 173 IPR004176 -
Ssu7g2631 858 Pfam Clp amino terminal domain, pathogenicity island component 23 51 IPR004176 -
Ssu7g2631 858 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
Ssu7g2631 858 MobiDBLite consensus disorder prediction 531 591 - -
Ssu7g2631 858 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
Ssu7g2631 858 Gene3D - 9 174 IPR036628 -
Ssu7g2631 858 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 857 - -
Ssu7g2631 858 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 783 IPR027417 -
Ssu7g2631 858 MobiDBLite consensus disorder prediction 180 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2631 Ssu-Chr7 52219868 52223606 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2631 - - var:108320189 1458.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2631 7 52219868 52223606 Ssu7g2631 7 52219868 52223606 ECH
Ssu7g2631 7 52219868 52223606 Ssu6g2645 6 61674685 61675602 ECH
Ssu7g2631 7 52219868 52223606 Ssu9g1209 9 44876366 44878186 ECH