Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2626 ATGTCCAACGCCGCCGGAGCTCCCGACCGCCGCACCTCGCCGCCGCGGGGGGCTGCCGGCGCCCCCACCCGGCCGCCGCTGAAGCGCCACCTCGCCTTCGTGACGAAACCGCCGTTCGCCCCGCCGGACGAGTACCACAGCTTTTCCAGTTCCGACTCTCGCCGCGTCGCCGACGAAGCCGTCGTCGTTAGATCTCCGTACATGAAGCGGAAGAGTGGAATGAATGACAGTGAAGGAGAGTCACAAGCACAAAAGTGGAGTAACAGCCCTGGATACACTAATGTTAGTAATGTAACGATTAGTCCCTTCAAAACTCCTGTGTCTGCAAAAGGGGGAAGGACACAGAAGGCAAAGGCTTCCAAAGAAGGCAGATCATGTCCTCTGACACCCATCTCAAATGCTGGTTCCCCTTCTCCTCTTACTCCTGCTAGCAACTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAAGTTCATCAATTTGGTCAAGCACGCAAAGGATGGTATTCTTGACCTAAATAAAGCAGCAGAAACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTTTTGGAAGGCATTGGTCTCATTGAAAAGAATATCAAGAACAGAATACATTGGAAGGGAATTGAATCTTCTACGTCTGGTCAGGTGGATGGTGATATCTCTGTACTTAAGGCAGAAGTTGAGAAACTTTCTTTGGAGGAGCAGGGATTAGATGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGAATTTGAGTGAAGATGAAAACAACCAGAAgtGCCTTTTTGTGACTGAAGAAGATATTAAAGGCCTACCTTGCTTCCagAATGAAACTCTAATAGCAATTAAAGCTCCGCATGGAACCACCCTGGAAGTCCCTGATCCTGAGGAAGCTGTCGACTATCCACAGAGGAGATATAGAATCATTCTTAGAAGCACAATGGGTCCCATTGATGTCTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGATAAATGGTGCTGAGCTCCCCATGATACCACTTGCTTCCAGTTCTGGGTCCAATGAGCAACTAGTGACAGAAATGGTTCCTGCTGAATGCAGCGGAAAAGAACTTGAACCTCAAACTCAGCTCTCTTCTCATGCATACACCGATATAAATGCTTCACAGGAGTTTGCCGGTGGCATGATGAAGATTGTCCCTTCAGATGTTGATaatgatGCAGATTATTGGCTTCTATCAGATGCTGACGTTAGCATAACAGATATGTGGAGAACAGATTCTAGTGTTGATTGGAATGGGGTAGACATGCTTCATTCTGATTTTGGAATCATTTCGAGGCCTCAAACTCCATCATCGGGGTTTGCTGAAGCCCCACCAACAGGAGCAAACTCTAATCAGAAATGA 1404 0.4651 MSNAAGAPDRRTSPPRGAAGAPTRPPLKRHLAFVTKPPFAPPDEYHSFSSSDSRRVADEAVVVRSPYMKRKSGMNDSEGESQAQKWSNSPGYTNVSNVTISPFKTPVSAKGGRTQKAKASKEGRSCPLTPISNAGSPSPLTPASNCRYDSSLGLLTKKFINLVKHAKDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKNIKNRIHWKGIESSTSGQVDGDISVLKAEVEKLSLEEQGLDDQIREMQERLRNLSEDENNQKCLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAELPMIPLASSSGSNEQLVTEMVPAECSGKELEPQTQLSSHAYTDINASQEFAGGMMKIVPSDVDNDADYWLLSDADVSITDMWRTDSSVDWNGVDMLHSDFGIISRPQTPSSGFAEAPPTGANSNQK 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2626 467 Gene3D - 141 214 IPR036388 -
Ssu7g2626 467 Coils Coil 225 266 - -
Ssu7g2626 467 PANTHER TRANSCRIPTION FACTOR E2F 25 447 IPR015633 GO:0000978|GO:0006357
Ssu7g2626 467 Gene3D - 219 329 - -
Ssu7g2626 467 CDD E2F_DD 225 329 IPR032198 GO:0046983
Ssu7g2626 467 MobiDBLite consensus disorder prediction 1 90 - -
Ssu7g2626 467 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Ssu7g2626 467 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Ssu7g2626 467 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Ssu7g2626 467 MobiDBLite consensus disorder prediction 126 140 - -
Ssu7g2626 467 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Ssu7g2626 467 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Ssu7g2626 467 MobiDBLite consensus disorder prediction 103 140 - -
Ssu7g2626 467 MobiDBLite consensus disorder prediction 445 467 - -
Ssu7g2626 467 PANTHER TRANSCRIPTION FACTOR E2FB 25 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2626 Ssu-Chr7 51913260 51917974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2626 22 464 E2F-DP Transcription Factor Family AT2G36010 55.814 3.42e-163 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Ssu7g2626 E2F_CC-MB 3.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2626 K06620 - gmx:100811762 863.218