Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2610 ATGTCCATAAACCACTTCTCCATGGACCTTCCCGAAACGACACCGTGGTGgtctcaacaacaacaacaacaacagcccATCTTAATAGACCCAACCCCAAACCCGCCCTTCCATTACCCGTCCGGTCTCAACCTCAACAACCAAAACGACAACGACGAGGACGAAGACGACGAGGATGACAACCAAACGACGACGACCGCGACCGCGACTCAGAAAGAGGCGGAAGACGACAGGGAACCCATGTTCGAGAAGCCCTTGACGCCGAGCGACGTGGGGAAGCTGAACCGCCTCGTAATCCCGAAGCAGCACGCGGAGAAGTACTTCCCCCTCGGCGGCGGTGACTCGGGCGAGTGCAAGGGGCTGCTGCTGAGTTTCGAGGACGAGTCCGGCAAGTGCTGGCGGTTCCGCTACTCGTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAAGGGTGGAGCCGCTACGTCAAGGACAAGCGCCTCGACGCGGGCGACGTCGTTTTGTTCGAGCGGCACCGCGCCGACGCCCACCGCCTCTTCATCGGCTGGAGGCGCCGCCGACAGAGCGACGCCCTACCGGCGCACGTTAGCAGGGCGGTGGGGCAAGGGAAGAGTGGTGAGGGGAGTAGTAAGAATGAGGCCGGTGCTGGTGGTGGGGGCGTGGGCGTGGGGTGGACCAGAGGGTTCTATTCTGCGCATCCTTATCCTACGCATCAGCCCTTGCCATACCAACATGACTGTCTTCATGCAGGTAGAGGGTCCCAAGGTCAGAGCCAAAGGACGAGACCAGTGGGAAACAGTTCCAGTTCCAGTTCGAGTTCAAGGGTACTTAGGCTGTTTGGGGTCAACATGGAATGCCAAACCGAAAGTGATTCTGGACCCTCCACACCCCAATGCTCCTACAATAGTAGCAACATGCCATCCACCCAGGGCACAGATACCCATCGCCATTTCTACCATCATCATCAACCTTCTCCCAATCCTCCCCCTCACATGGTACGTCACCAACCATACTACTACTAG 1023 0.5689 MSINHFSMDLPETTPWWSQQQQQQQPILIDPTPNPPFHYPSGLNLNNQNDNDEDEDDEDDNQTTTTATATQKEAEDDREPMFEKPLTPSDVGKLNRLVIPKQHAEKYFPLGGGDSGECKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFERHRADAHRLFIGWRRRRQSDALPAHVSRAVGQGKSGEGSSKNEAGAGGGGVGVGWTRGFYSAHPYPTHQPLPYQHDCLHAGRGSQGQSQRTRPVGNSSSSSSSSRVLRLFGVNMECQTESDSGPSTPQCSYNSSNMPSTQGTDTHRHFYHHHQPSPNPPPHMVRHQPYYY 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2610 340 Pfam B3 DNA binding domain 82 186 IPR003340 GO:0003677
Ssu7g2610 340 MobiDBLite consensus disorder prediction 285 313 - -
Ssu7g2610 340 MobiDBLite consensus disorder prediction 1 89 - -
Ssu7g2610 340 SUPERFAMILY DNA-binding pseudobarrel domain 77 188 IPR015300 -
Ssu7g2610 340 MobiDBLite consensus disorder prediction 251 278 - -
Ssu7g2610 340 MobiDBLite consensus disorder prediction 1 28 - -
Ssu7g2610 340 MobiDBLite consensus disorder prediction 241 340 - -
Ssu7g2610 340 Gene3D - 70 195 IPR015300 -
Ssu7g2610 340 MobiDBLite consensus disorder prediction 192 218 - -
Ssu7g2610 340 ProSiteProfiles B3 DNA-binding domain profile. 82 187 IPR003340 GO:0003677
Ssu7g2610 340 SMART B3_2 82 187 IPR003340 GO:0003677
Ssu7g2610 340 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 20 308 - -
Ssu7g2610 340 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 308 IPR044800 GO:0003700
Ssu7g2610 340 CDD B3_DNA 80 177 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2610 Ssu-Chr7 51539124 51541432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2610 75 293 RAV Transcription Factor Family AT5G06250 51.316 3.26e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Ssu7g2610 B3 4.8e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2610 - - aprc:113872948 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2610 7 51539124 51541432 Ssu7g2610 7 51539124 51541432 ECH
Ssu4g0825 4 12958834 12960243 Ssu7g2610 7 51539124 51541432 PCT