Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2587 ATGCCAATGCCAATGTCAATGTCACTATCATCCATTCCACTAAAGCCTCGCCCCCCCTCTTTCCTCCACTTGCAATCCCTCGCCCGCCACAACCGCCTCCCGCCAAAACCGGTCTCCCTCCGAATCCGCGCCGAGGCCCACACCGTCGAGTTCCTGAAACCCTACCTCCTCGCCCAGCGCAAACCCGTCCTCTGCGGGTGGCTCTGCAGCGCCGTCTCCGTGTACTCCCTCTCCAGCCTCCTCTCCAAACTCTCCAAAATCGCCGCCGTCGACGCCGTCGGCGCCGCCCCCCTCGCCGCGCTCCTCCTCGCGCGCCTCGCCGCCAGCTACGCGCAGCACGCGCTCCTCTGGGAAGCCTCGCTCGACGCCGTCTACAACCTCCGCCTCCACGTCTTCGACCGCGTCCTCCGCAAGGAGCTCGCGTATTTCGAAGGGAACCGCGCCGCGTCCGCCGGGGACATCGCGTACCGAATCACCGCCGAAGCTTCCGACCTCGCCGTTACCTTGTACACTCTTCTCAACACCATAGTACCCAGTACTCTGCAGTTGTCGGCAATGATCATGCAGATGTTAGTTATAAGTCCTGCACTTACTTTGATTTCAGCTATGATTATTCCTTGCATGGTGCTAGTTGTTGCCTTTCTTGGTCAAGAACTTCGCAAGGTATCCAAAGAGGCACATGTTAGCATTGCTGCTCTCTCAGCTTATCTAAATGAGgtgCTTCCTGCAATTCTCTTCGTGAAAGCAAACAACGCAGAGTCGTGTGAGAATACCAGGTTTAAGAGACTGGCTCTGATGGACTATTCTGCAAAgctgaagaagaaaaagatgaaagcaTTGATTCCTCAGATAATACAAGCTATTTATTTTGGAGTCCTTTCCATACTTTGTGCTGGTTCGCTGGTGATTTCGAGAGGTTCATTTGATCGCTATAGCTTGGTTTCATTCGTGACATCGTTGCTTTTCTTGATTCAGCCAATCCAGGATGTAGGAAAAGCTTACAATGAATGGAGGCAGGGAGAACCGGCTGTTGAACGCTTGCTTGCCATGACCAGGttcaaaaataagGTGGTTGAGAAAGCAGATGCTGTTGATTTGGACCATGTTACAGGGGACCTGAAATTCTGTGATGTCTCCTTTGGGTATAATGATGACATGCCACTTGTTTTAAACGGATTGAATCTTCACATTAGAACTGGAGAGATAGTTGCTATTGTGGGTCCTTCTGGTGGAGGGAAAACAACGCTTGTAAAACTGTTACTTCGGCTTTATGATCCTATATCTGGTTGTATATTGATTGATAACCATAACATCCAAAACATTCGGTTGGCAAGTTTGAGAAGACATGTTAGTGTTGTTTCTCAAGATATAACACTTTTTTCAGGTACAGTTGCTGAAAACATTGGTTATAGGGATCTGACAACAAAAATTGACATGGAGAAGGTGAAGCATGCAGCTCAAACTGCTCATGCAGATgagtttattaaaaaacttcCAGAAGGATACAAAACCAATATTGGACCAAGGGGCTCAACTTTAAGTGGTGGCCAGAGGCAAagGCTCGCTATTGCGAGGGCTTTATATCAAAATTCTTCTATATTAATTCTGGATGAGGCAACTTCGTCCTTGGATAGCAGATCTGAGTTATTAGTGAGACAAGCTGTAGAGCGTTTGATGCAAAATCGCACAGTGCTTGTGATTTCCCATCGCTTGGAAACAGTTATGATGGCTAAACGAGTATTTCTTTTGGAAAATGGGAATCTAAAAGAGCTGCCTCGATCAACTATGGTGGACGGTCACAAGGATACATTGCTATCATCTGGGCTTGTTATTTGA 1836 0.4706 MPMPMSMSLSSIPLKPRPPSFLHLQSLARHNRLPPKPVSLRIRAEAHTVEFLKPYLLAQRKPVLCGWLCSAVSVYSLSSLLSKLSKIAAVDAVGAAPLAALLLARLAASYAQHALLWEASLDAVYNLRLHVFDRVLRKELAYFEGNRAASAGDIAYRITAEASDLAVTLYTLLNTIVPSTLQLSAMIMQMLVISPALTLISAMIIPCMVLVVAFLGQELRKVSKEAHVSIAALSAYLNEVLPAILFVKANNAESCENTRFKRLALMDYSAKLKKKKMKALIPQIIQAIYFGVLSILCAGSLVISRGSFDRYSLVSFVTSLLFLIQPIQDVGKAYNEWRQGEPAVERLLAMTRFKNKVVEKADAVDLDHVTGDLKFCDVSFGYNDDMPLVLNGLNLHIRTGEIVAIVGPSGGGKTTLVKLLLRLYDPISGCILIDNHNIQNIRLASLRRHVSVVSQDITLFSGTVAENIGYRDLTTKIDMEKVKHAAQTAHADEFIKKLPEGYKTNIGPRGSTLSGGQRQRLAIARALYQNSSILILDEATSSLDSRSELLVRQAVERLMQNRTVLVISHRLETVMMAKRVFLLENGNLKELPRSTMVDGHKDTLLSSGLVI 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2587 611 Pfam ABC transporter transmembrane region 72 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g2587 611 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 68 339 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu7g2587 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 591 IPR027417 -
Ssu7g2587 611 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 610 IPR003439 GO:0005524
Ssu7g2587 611 SMART AAA_5 399 587 IPR003593 -
Ssu7g2587 611 CDD ABC_6TM_exporters 112 347 - -
Ssu7g2587 611 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 42 601 IPR039421 -
Ssu7g2587 611 SUPERFAMILY ABC transporter transmembrane region 52 350 IPR036640 GO:0005524|GO:0016021
Ssu7g2587 611 ProSitePatterns ABC transporters family signature. 513 527 IPR017871 GO:0005524
Ssu7g2587 611 Gene3D - 364 608 IPR027417 -
Ssu7g2587 611 Gene3D ABC transporter type 1, transmembrane domain 47 352 IPR036640 GO:0005524|GO:0016021
Ssu7g2587 611 Pfam ABC transporter 390 541 IPR003439 GO:0005524
Ssu7g2587 611 PANTHER ABC TRANSPORTER B FAMILY MEMBER 29, CHLOROPLASTIC 42 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2587 Ssu-Chr7 51119365 51125623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2587 363 608 Calmodulin-binding Proteins AT2G36910 44.000 7.58e-55 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2587 K02021 - gmx:100788075 949.888