Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2577 ATGGACATTTTTTTGGAGCTCCAAAATGGGACTTTATTCTCCGTCAAAGCGAGGTCCACTGACACAATCGAAACAATCAAAGAGAGAGTGGAAAAGTGCCACGGCATTCCCGTCTCCAAGCAAACGTTAATCCTCAACGGCCAAGTTCTCGAAGACTACTTTCATTTTGGTAACCTCCTAATCTTTTCGGACACTCGCATTCAGCTCCATGTGTCCCCTGACAAGAAGGAATTGGTTAATTCTCCGGACACTGCTTCCTCGTCCACAACGCATGTAGACTACCCTTCCCGAGAAAGAGAGCCCCAAGCTCGTCGAGTTGTTGTGGCTCACCTAGCCCTAGACCCAAAAGAAAATCCAAGAGGCCTTCTAAGTTAA 375 0.472 MDIFLELQNGTLFSVKARSTDTIETIKERVEKCHGIPVSKQTLILNGQVLEDYFHFGNLLIFSDTRIQLHVSPDKKELVNSPDTASSSTTHVDYPSREREPQARRVVVAHLALDPKENPRGLLS 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2577 124 SUPERFAMILY Ubiquitin-like 1 88 IPR029071 -
Ssu7g2577 124 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN 7SL RNA1-RELATED 1 99 - -
Ssu7g2577 124 SMART ubq_7 1 72 IPR000626 GO:0005515
Ssu7g2577 124 CDD Ubl_ubiquitin_like 3 52 - -
Ssu7g2577 124 Gene3D - 1 71 - -
Ssu7g2577 124 ProSiteProfiles Ubiquitin domain profile. 1 72 IPR000626 GO:0005515
Ssu7g2577 124 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 99 - -
Ssu7g2577 124 MobiDBLite consensus disorder prediction 75 101 - -
Ssu7g2577 124 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Ssu7g2577 124 Pfam Ubiquitin family 3 73 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2577 Ssu-Chr7 50947877 50948251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2577 1 52 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.538 2.95e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2577 - - gmx:100794475 75.485