Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2559 ATGGTGGAAGAACACCGATGCCAAGCTCCCGAAGGCCACCGACTCTGCGCCAACAACTGCGGCTTCGCCGGCAGCCCCGCCACCATGAATCTCTGCTCCAAATGCTACGGCGCGATCCGTTTGAAGGAGCAAGAAGAAGCGTCGACCGAATCCACCATCGAAACCGCGCtctcctcctccgccgccgccgcGAAGCCGGCGCTGTCCACGTCACCTCCGTCGCAGGCGGTGGTGGTTGCTGTCGAGGCTCCGCCTCCGGCGGAGATCGCGTCGAGTTCCCCAACCTCCGGTTCGGTTTCCGCGCAACCGAACCGGTGCGCCACGTGTCGGAAGCGCGTGGGGTTGACCGGGTTCAAGTGCAGGTGCGGGGTGACGTTCTGCGGGGCCCACAGGTACCCGGAGAAACACGCGTGCGGCTTCGACTTTAGGACGGTGGGGCGCGAGGAGATCGCTCGGGCCAACCCTGTGATCAAAGCGGAGAAGCTGCGCAGGATTTGA 498 0.6145 MVEEHRCQAPEGHRLCANNCGFAGSPATMNLCSKCYGAIRLKEQEEASTESTIETALSSSAAAAKPALSTSPPSQAVVVAVEAPPPAEIASSSPTSGSVSAQPNRCATCRKRVGLTGFKCRCGVTFCGAHRYPEKHACGFDFRTVGREEIARANPVIKAEKLRRI 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2559 165 ProSiteProfiles Zinc finger AN1-type profile. 100 146 IPR000058 GO:0008270
Ssu7g2559 165 Pfam A20-like zinc finger 14 36 IPR002653 GO:0003677|GO:0008270
Ssu7g2559 165 Pfam AN1-like Zinc finger 106 141 IPR000058 GO:0008270
Ssu7g2559 165 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Ssu7g2559 165 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Ssu7g2559 165 Gene3D - 82 161 IPR035896 -
Ssu7g2559 165 Gene3D - 1 71 - -
Ssu7g2559 165 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 3 1 165 - -
Ssu7g2559 165 SMART AN1_Zf_4 106 143 IPR000058 GO:0008270
Ssu7g2559 165 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 165 - -
Ssu7g2559 165 SUPERFAMILY AN1-like Zinc finger 95 160 IPR035896 -
Ssu7g2559 165 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2559 Ssu-Chr7 50469529 50470026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2559 1 165 C2H2 Transcription Factor Family AT3G52800 53.529 1.33e-55 171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2559 7 50469529 50470026 Ssu7g2559 7 50469529 50470026 ECH
Ssu4g0873 4 13684534 13684863 Ssu7g2559 7 50469529 50470026 PCT