Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2548 ATGAAGGTGATCGCTGCGTACTTGCTCGCCGTGCTCGGAGGCAACGCCAGCCCCTCCGCCGATGACATCAAGGAAATATTGGGCTGCGTTGGAGCAGAAGCAGATGATGATAGGATTGAACAATTGTTGTCTGAAGTTAAGGGAAAAGACATAGTTGAGGTTATTGCTGCCGGTAGGGAAAAGCTGGCCTCAGTGCCtgctggtggtggtggtggtgccgtTGCCGTCGCCGCTGCTCCCgggggaggtggtggtggtgctgcTCCAGCTGCTGCCGAGgcaaagaaagaggaaaaagaggaagagaaagaggaatcTGACGatGATATGGGTTTCGGTCTCTTCGATTAA 351 0.4046 MKVIAAYLLAVLGGNASPSADDIKEILGCVGAEADDDRIEQLLSEVKGKDIVEVIAAGREKLASVPAGGGGGAVAVAAAPGGGGGGAAPAAAEAKKEEKEEEKEESDDDMGFGLFD 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2548 116 CDD Ribosomal_P2 1 116 IPR044076 GO:0002182|GO:0003735|GO:0022625
Ssu7g2548 116 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P2A-LIKE 2 116 - -
Ssu7g2548 116 MobiDBLite consensus disorder prediction 76 116 - -
Ssu7g2548 116 Hamap 50S ribosomal protein L12 [rpl12]. 2 116 IPR027534 GO:0003735|GO:0005840|GO:0006414
Ssu7g2548 116 MobiDBLite consensus disorder prediction 102 116 - -
Ssu7g2548 116 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 2 116 IPR044076 GO:0002182|GO:0003735|GO:0022625
Ssu7g2548 116 Pfam 60s Acidic ribosomal protein 17 115 - -
Ssu7g2548 116 Gene3D - 1 59 IPR038716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2548 Ssu-Chr7 50156155 50157156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2548 1 116 Cytoplasmic Ribosomal Protein Gene Family AT3G44590 64.655 1.68e-31 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2548 K02943 - egr:104452151 132.109