Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2547 ATGGCCAAGACCTTCAAATACATCATCCTCGGAGGAGGAGTTTCCGCCGGTTATGCTGCGAGGGAGTTTGCCAAACAGGGAGTTAAGCCAGGGGAGTTGGCTATCATATCCAAAGAAGCGGTAGCACCTTATGAACGTCCTGCTCTCAGCAAGGCTTACCTTTTTCCCGAGTCCCCTGCTAGACTTCCTGGGTTCCATGTCTGTGTCGGAAGTGGGGGAGAAAGGTTGCTTCCTGCGTGGTACACAGAGAAAGGGATAGAGTTAATTCTTAGTACAGAAATAGTAAAGGCAGATCTTGCTGCAAAATCTCTGATCAGTGCTGGAGGAGAAACATTCAGTTATCAGATTTTGATTATTGCAACTGGCTCGACAGTTATAAGGCTGACAGATTTTGGTGTCGAAGGAGCTGATGCGAAAAACATCTTTTATTTGAGGGAGGTTGACGATGCTGACAAATTGTATGAGGTAATCAAGGCAAAGAAGAATGGGAAAGCTGTGGTTGTTGGGGGTGGATACATTGGTCTGGAGCTTAGTGCAGTGTTGAGACTCAACAATCTTGATGTTACCATGGTCTACCCGGAGCCTTGGTGTATGCCACGACTTTTTACATCTGGTATAGCTGCATTCTATGAGGGGTATTACGCAAACAAGAGTGTCAATATCATTAAAGGAACTGTTGCTGTTGGATTCACTGCTAATTCCGATGGAGAGGTAAAAGAAGTCAAACTAAAGGATGGCCGGGTCCTGGAAGCtgatattgttgttgttggtgttggAGGAAGGCCTCAAACATCCTTATTCAAGGGGCAGGTTGAAGAGGAGAAGGGTGGAATCAAGACTGATTCCTTCTTCAAAACAAATCTTTCCGATGTATATGCTGTTGGCGATGTTGCTACTTTCCCTTTGAAATTGTACAGTGAATTGAGAAGAGTTGAACATGTTGATCATGCTCGCAAATCAGCTGAACAGGCTGTGAAGGCCATCAAGGCAGCCGAGGATGGAAAAACAGTTGAGGAGTATGATTACCTTCCATACTTCTATTCCCGTTCATTTGATCTGTCTTGGCAATTCTATGGCGACAATGTCGGTGACACTGTGCTATTTGGAGACAACAATCCAGCGTCATCAAAGCCTAAGTTTGGGACATACTGGATTAAAGATGGGAAAGTTGTTGGGGCCTTTCTGGAGAGTGGAACTCCTGAAGAGAACAAGGCTATTGCTAAAGTTGCTAGAGTCCAGCCTCCGGTGACGGATGTAGACCAACTTGCTAAGGAAGGTCTTTCCTTTGCTAGTAAAATATAA 1302 0.4424 MAKTFKYIILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPESPARLPGFHVCVGSGGERLLPAWYTEKGIELILSTEIVKADLAAKSLISAGGETFSYQILIIATGSTVIRLTDFGVEGADAKNIFYLREVDDADKLYEVIKAKKNGKAVVVGGGYIGLELSAVLRLNNLDVTMVYPEPWCMPRLFTSGIAAFYEGYYANKSVNIIKGTVAVGFTANSDGEVKEVKLKDGRVLEADIVVVGVGGRPQTSLFKGQVEEEKGGIKTDSFFKTNLSDVYAVGDVATFPLKLYSELRRVEHVDHARKSAEQAVKAIKAAEDGKTVEEYDYLPYFYSRSFDLSWQFYGDNVGDTVLFGDNNPASSKPKFGTYWIKDGKVVGAFLESGTPEENKAIAKVARVQPPVTDVDQLAKEGLSFASKI 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2547 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 114 132 - -
Ssu7g2547 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 276 298 - -
Ssu7g2547 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 251 267 - -
Ssu7g2547 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 164 182 - -
Ssu7g2547 433 PRINTS FAD-dependent pyridine nucleotide reductase signature 7 26 - -
Ssu7g2547 433 Gene3D - 345 433 IPR016156 GO:0016491|GO:0050660
Ssu7g2547 433 Gene3D - 8 324 IPR036188 -
Ssu7g2547 433 Gene3D - 128 259 IPR036188 -
Ssu7g2547 433 PANTHER APOPTOSIS-INDUCING FACTOR 1 2 433 - -
Ssu7g2547 433 SUPERFAMILY FAD/NAD(P)-binding domain 2 209 IPR036188 -
Ssu7g2547 433 SUPERFAMILY FAD/NAD-linked reductases, dimerisation (C-terminal) domain 338 431 IPR016156 GO:0016491|GO:0050660
Ssu7g2547 433 PRINTS Pyridine nucleotide disulphide reductase class-I signature 164 189 - -
Ssu7g2547 433 PRINTS Pyridine nucleotide disulphide reductase class-I signature 291 298 - -
Ssu7g2547 433 PRINTS Pyridine nucleotide disulphide reductase class-I signature 252 266 - -
Ssu7g2547 433 PRINTS Pyridine nucleotide disulphide reductase class-I signature 6 28 - -
Ssu7g2547 433 Pfam Pyridine nucleotide-disulphide oxidoreductase 6 321 IPR023753 GO:0016491
Ssu7g2547 433 PANTHER MONODEHYDROASCORBATE REDUCTASE-LIKE ISOFORM X1 2 433 - -
Ssu7g2547 433 SUPERFAMILY FAD/NAD(P)-binding domain 153 331 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2547 Ssu-Chr7 50148707 50152690 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2547 117 302 Acyl Lipid Metabolism Gene Families AT3G17240 34.715 3.25e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2547 K08232 - gmx:100787700 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2547 7 50148707 50152690 Ssu7g2547 7 50148707 50152690 ECH
Ssu4g0618 4 9833201 9839215 Ssu7g2547 7 50148707 50152690 PCT