Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2546 ATGGGTTCGTTCTCTGGCACTTGTGAAATTGTTGAAGCAAGGGAAGACCAAAATACAGAGAAAGATGCAGGGATATATCAGTCCAATTCTGGATATAGCATGGCTGAGAAAAATCAAAAGCATCCTGTGCTGAAACCGGGATTTAAGGATAATCTAGATGATGATATTAATAAGCTGTTTGAATCAATTACTCTTAAATCTTCATCAAGGgattttaactttttacaaGATGGTTCAAGCTCTAAGATGAAAAGTGCATTAAAAAAACCAATTACAGCGGGTGTTCCTCGGTCTCCACGAGTTGGACCTTCTGAGCCTGTGACTTTGAAGCAGGCCTTAAGAGACCTATGTATATCTAAGGCATCAGAAATGGCTGCCATGAAAAGATTATCAAAGTCATCTGCTTCTCCTAGAATATCTGAGGTTGGGAGGATACAGACATTGTACAATTCAGTTGTAGCTGAAGGTAGACGATCTGGGCCTTCTAATGTTGAGAGTAAAGGGAGTACAATTGAAATATCTCTAGTGCCAGAAGAAAGCAGCTCACTTGCCTTGGATAAACCTTGCCAGTCTCATCAAACTATTAAAAGCACATCACTGAGCCAAAATGTTCAATCTTCCAAAATTGCTGTTGCAACTACACAGAATGATTCTGGGGCTTCATTGATGCAAAGTGACTTGGCTAGTTCATCAAGTAAAGTTGGGGTTCTATCTCAGTCATCAGAGCCTGctcaaatagaaaaacaaacgTCTGCATCTTCTCCGTCTAGTTGTAACACCAATGGAAGTAAATTAGAGTTGCCCGAAAATGCTTCTTCCcctaaaaaattaggaaataaaGCATCTGTATCAAAGAATGGGCGGAAAGGTAGGTTACAGGCAGTCTCTTCCTCAGCTACTTCAGTAAATGGCAATAGAGTGTGCAAACTGTCACGCATTGCCCCTCGTACTGTCAAATCAATTATCAAGAACAAGAATGTGGGTAAGAAAAAACTAAAGCAGGATTCAGTTTCTGCTTTATTTGATCCTGCATCCAATGAAGTAAATAACAAGTCAGTTCCTGGTACAACTCAACTTGTTTGTGAGAGATGTTGGTGTGCTATAGAAAACAACAAAAGTATTATAACATCAAACTCTATCAGTCCTGGAGATGGAATAAAGTCTGTTAATATGCACTCTGGCTCAGCATCAGCTGGCTGTAATAGCAGCAGAGAAGTtacaaaagtgaaaaagaacACCGTATTGAAAGAGCAACTTGAATTCTCACATAGTTCAAAGAGTAGCCAAGGTGACTACAGTAGGACCACCAGTACCAGTGATGAGAGTAATCTCAGTGGGTCTAGTTGTGGCAATAGGCCTCACATGTCAAAGGATGTTAGATGGGAAGCCATACAACATGCTCAAATGCAGCATGGAGTCTTGGGCTTGAGACACTTCAATCTTTTGAAGAAACTAGGCTGTGGAGACATTGGGACTGTCTATCTTGCTGAACTAATTGGCGAAAATTGTTCGTTTGCTATTAAGGTGATGGACAATGAATTTTTGGCAAGAAGGAAGAAGATGCCTAGGGCTCAAActgaaagagaaatattaaGGATGCTGGATCATCCTTTTCTGCCAACAATGTATGCGCAGTTTACATCAGATAATTTGTCGTGTCTGGTCATGGAGTATTGTCCAGGTGGTGATCTTCATGTTCTACGGCAGAAACAGCTTGGTAGAAGTTTTTCAGAGCCAGCTGCAAGGTTTTATGTTGCCGAAGTCCTTCTTGCTTTGGAGTACTTGCACATGCTTGGAGTGGTTTACCGTGATTTGAAACCTGAAAATATTCTTGTTCGAGAAGACGGCCACATTATGCTCACAGATTTTGATCTGTCAATGAGGTGTGATGTCAGCCCAACACTTCTGAAATCATCTTCTGATATGGATCCTGCAAAGATTTCTGGTCCTTGTGCACAATCGAGTTGCATTGAGCCATTCTGTATTGAACCATCCTGTCAAGTTCCATGCTTCAGCCCTAGACTCTTACCTTCTGCCACAAaagcaagaaaattaaaaactgatcTTGTTGCTCAGTTCAGATCATTGCCACAGCTCGTGGCTGAGCCCACGGATGCAAGATCAAATTCATTTGTTGGTACTCACGAATACTTAGCGCCTGAGATCATCAAAGGAGAGGGACATGGAGCCGCAGTTGACTGGTGGACGTTTGGTGTTTTTCTTTATGAACTTTTATATGGTACAACACCCTTCAAAGGTTCTAATAATGAAGAAACATTAGCCAACGTGGTGTTGCAAGGTCTCAGATTCCCTGACAGCCCATTTGTTAGTTTCCAAGCGAGGGATCTCATTAGAGGGTTGTTGGTTAAAGAGCCTGAAAACCGTTTGGGTTCAGAGAAAGGGGCTGCTGAGATAAAACAGCACCCCTTCTTCGAAGGCCTTAATTGGGCCTTAATACGTTGTGCTATCCCACCAGAACTTCCAGACTTATGTGAATTTGGAGTTTCAGAGATGACCCCACAGTCCCAGGGCAAGGGTGGTAAGTATGTAGAGTGTAATGCAGCTGGAGAGCAAGTGGAATTTGAGTTGTTTTAA 2595 0.405 MGSFSGTCEIVEAREDQNTEKDAGIYQSNSGYSMAEKNQKHPVLKPGFKDNLDDDINKLFESITLKSSSRDFNFLQDGSSSKMKSALKKPITAGVPRSPRVGPSEPVTLKQALRDLCISKASEMAAMKRLSKSSASPRISEVGRIQTLYNSVVAEGRRSGPSNVESKGSTIEISLVPEESSSLALDKPCQSHQTIKSTSLSQNVQSSKIAVATTQNDSGASLMQSDLASSSSKVGVLSQSSEPAQIEKQTSASSPSSCNTNGSKLELPENASSPKKLGNKASVSKNGRKGRLQAVSSSATSVNGNRVCKLSRIAPRTVKSIIKNKNVGKKKLKQDSVSALFDPASNEVNNKSVPGTTQLVCERCWCAIENNKSIITSNSISPGDGIKSVNMHSGSASAGCNSSREVTKVKKNTVLKEQLEFSHSSKSSQGDYSRTTSTSDESNLSGSSCGNRPHMSKDVRWEAIQHAQMQHGVLGLRHFNLLKKLGCGDIGTVYLAELIGENCSFAIKVMDNEFLARRKKMPRAQTEREILRMLDHPFLPTMYAQFTSDNLSCLVMEYCPGGDLHVLRQKQLGRSFSEPAARFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSMRCDVSPTLLKSSSDMDPAKISGPCAQSSCIEPFCIEPSCQVPCFSPRLLPSATKARKLKTDLVAQFRSLPQLVAEPTDARSNSFVGTHEYLAPEIIKGEGHGAAVDWWTFGVFLYELLYGTTPFKGSNNEETLANVVLQGLRFPDSPFVSFQARDLIRGLLVKEPENRLGSEKGAAEIKQHPFFEGLNWALIRCAIPPELPDLCEFGVSEMTPQSQGKGGKYVECNAAGEQVEFELF 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2546 864 MobiDBLite consensus disorder prediction 233 298 - -
Ssu7g2546 864 MobiDBLite consensus disorder prediction 1 47 - -
Ssu7g2546 864 CDD STKc_phototropin_like 477 830 - -
Ssu7g2546 864 MobiDBLite consensus disorder prediction 233 268 - -
Ssu7g2546 864 MobiDBLite consensus disorder prediction 420 452 - -
Ssu7g2546 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Ssu7g2546 864 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 864 - -
Ssu7g2546 864 Gene3D Phosphorylase Kinase; domain 1 477 558 - -
Ssu7g2546 864 PANTHER FLIPPASE KINASE 1-RELATED 1 864 - -
Ssu7g2546 864 Pfam Protein kinase domain 480 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2546 864 Pfam Protein kinase domain 708 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2546 864 Gene3D Transferase(Phosphotransferase) domain 1 559 628 - -
Ssu7g2546 864 MobiDBLite consensus disorder prediction 377 403 - -
Ssu7g2546 864 SUPERFAMILY Protein kinase-like (PK-like) 454 828 IPR011009 -
Ssu7g2546 864 Gene3D Transferase(Phosphotransferase) domain 1 704 826 - -
Ssu7g2546 864 SMART serkin_6 479 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2546 864 ProSiteProfiles Protein kinase domain profile. 479 811 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu7g2546 864 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2546 Ssu-Chr7 50088194 50092816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2546 1 864 AGC Kinase Gene Family AT3G52890 53.656 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu7g2546 Pkinase 5.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2546 - K08286 gmx:100813470 1512.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1100 4 17510195 17511073 Ssu7g2546 7 50088194 50092816 PCT
Ssu4g0886 4 13882622 13886156 Ssu7g2546 7 50088194 50092816 PCT