Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2544 atGGACTTGCAGTTGAAGCAATGGAGAAACCAGCATGAGTCAGAGCAAGAACATTCTTCAAACATGCCAAAATTTCTCCACCAACACCCACTCTCATCTGCTTCTGCACTCCCTTTGTTTGTACCTGAACCCACCGGCAAAGTCAGCACCCTGTCAGCGTTTTCTGATTCCACGTTACCTGCTCCCAGGCTTCCCAGTATGGGGAGTTGTTTCAGCTTTGCACAGTGGCAAGAGCTTGAGTTGCAGGCTCTGATATTCAGCTACATCCTGGCCGGTGCTGCTGTTCCTCCTGAGCTGCTTCAACCAATCAAGAAAAGCTTCCTTCATTCCCCTCCCTATTTCCTTCAACATTATCACCCTGCTTTGCTGGAATCAGGGTACTGGGGAAGAGGAGCACTGGATCCGGAGCCGGGGCGGTGCCGGAGGACCGACGGCAAGAAGTGGCGGTGCTCGAGGGACGCGGTGGCGGGTCGGAAGTACTGCGAGCGCCACATGCATCGTGGCCGAAGCCGTTCAAGAAAGCCTGTGGAACAACGTCATGGACAGGGATCTCTTACTGCCATAACCTCCTCCATTTCTTCTCCACCCTCTGCTTCATTCAAATCCCCTTTCGATCTCCTCTGCCTCGATGAACGTTCCTCTGGCACGAAGAGTGATAGCAAGAGCCATGATCATGTGGATGGGGATGGAAAATCTGACGGCCATGTCCTGAGGCATTTCTTTGATGATTGGCCAAGGACACTGCAAGAGCCTGACAATGGTGAAAACAATGGTAGCGTTATCAACTCGGGAACGTGCCTCTCTATTTCAACGCCGGGAATCACTTCCTCGGATGTGTCGTTGAAATTGTCCACTGGTTATGGAGAGGGCGCGTGCCACGTGGCTTCAGTAGGAGGACCACTTGCAGAGGCATTGAGATCATCCACCACCACTTCTTCACCAACCAGTGTTCTGCTTCAGTTGCCTCCTCGTTCTGCACGTGAGGCCAGCTTCATTAGCGGCTAG 1005 0.5274 MDLQLKQWRNQHESEQEHSSNMPKFLHQHPLSSASALPLFVPEPTGKVSTLSAFSDSTLPAPRLPSMGSCFSFAQWQELELQALIFSYILAGAAVPPELLQPIKKSFLHSPPYFLQHYHPALLESGYWGRGALDPEPGRCRRTDGKKWRCSRDAVAGRKYCERHMHRGRSRSRKPVEQRHGQGSLTAITSSISSPPSASFKSPFDLLCLDERSSGTKSDSKSHDHVDGDGKSDGHVLRHFFDDWPRTLQEPDNGENNGSVINSGTCLSISTPGITSSDVSLKLSTGYGEGACHVASVGGPLAEALRSSTTTSSPTSVLLQLPPRSAREASFISG 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2544 334 MobiDBLite consensus disorder prediction 214 234 - -
Ssu7g2544 334 Pfam QLQ 71 103 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu7g2544 334 SMART QLQ_2 69 105 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu7g2544 334 PANTHER GROWTH-REGULATING FACTOR 3 9 333 - -
Ssu7g2544 334 PANTHER - 9 333 IPR031137 GO:0005634|GO:0006351|GO:0032502
Ssu7g2544 334 MobiDBLite consensus disorder prediction 161 199 - -
Ssu7g2544 334 MobiDBLite consensus disorder prediction 1 22 - -
Ssu7g2544 334 ProSiteProfiles WRC domain profile. 134 178 IPR014977 -
Ssu7g2544 334 MobiDBLite consensus disorder prediction 182 199 - -
Ssu7g2544 334 Pfam WRC 135 177 IPR014977 -
Ssu7g2544 334 ProSiteProfiles QLQ domain profile. 70 105 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2544 Ssu-Chr7 50072867 50075361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2544 1 321 GRF Transcription Factor Family AT3G52910 45.714 4.47e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Ssu7g2544 WRC 2.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2544 - - gmx:100817197 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2544 7 50072867 50075361 Ssu7g2544 7 50072867 50075361 ECH
Ssu4g0892 4 14013241 14016041 Ssu7g2544 7 50072867 50075361 PCT