Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2543 ATGGCGGAGAAGCACTTGCGGGAACTGctaaaggaggatcaagagccgtTCCTTCTAAAGCACTACGTTTCCGAGCGACGCCGCCAGCTGAGAAGGCCTTCCCCAAACAGCACCTCACAACTGAAAAAGAAACCGCAACAAACACAACTCAACAACTCAAACTTCCCCTTTAACAAATGCCTCCTCTCCCTCCACAACGCCACGAAGTCCCCGCTCCTGGAATTCGCGTCTCCGAGGAAGAGTCCCCTCAGGCCCTCCAACGCCCAAACCGCCGCGCTCCTCCTGGAAGCCGCTCTCAGGATCCACAAACACCCCAACGCGAAACCGAAGCCAAACAGGGCCTTGGGCCTCTTGGGCTCGCTCTTGAAAAGGCTCGCGAGCCGGAAGAGGGGAGTAGAGGGTGGCGCCGAGGTGGAGGGCTCCTGTGAGGTCGGGCGCACGTGCTCCTGCAATGCCAGGCCCAGCAGCGCCGCGTGGTCCGAGAGCAACGAGGACAAATCGCTGGACTTGGAAACTTCTAGCAGTGGCCACTCTTTTGACGACTCTGTTGAAGAGATTGAGTTTCTGGAAAAACGGAAACAAGACGCCGATTCTCCTTGTTTTGATGATCACGACTTCTTCTGTGAAAGTCCTTTTCGTTTCTTCCTCCAACGGAGCCCCAACTACTCCGGCCGCCGCACGCCGGAATTTTCTTCGCCGGTGGCGTCTCCCAGTCGCCACAAAACAGAGGACAAAGAAATTAATGGAGCTGATGGCGTCAACAAATTCCAATCGGGGGAAGAAGCCGAAGATAAGGAACAGTGCAGTCCAGTGTCTGTTTTAGACCCGCCCTTCGATGATGATGGGCATGAAAACGACCATGGAGAGGATGGTTTTGATTTGGACTGTAGCTATGCCAATGTACAAAgAACTAAGCAGCATCTATTAGACAGGCTTCGTAGATTTGAGAAACTTGCAGAGTTAGATCCAGTAGAACTTGAGAAAAGAATGCTAGATCAAGAAGACGAGTATGAAACATTTATTGAAGATGTTGACAGTGAAACAACATGTGAAGAAAAGGCTGTGAGAGAAACAGTCTTTGAAATCCTCTGCCATTCAAGAGTTCATGACATACAGCAAGCCCCTGAAGACCTTAAGAGGCTGGTTTATGATCTCATCATGGAGGACGAGGCAGAAGTTAATTCTTCAGAAGAGAGGAACATGATGATAAGAAGGGTTTGTAGGAGGCTGGAATTATGGAAAGAAGTGGAGTCCAACACTATTGATATGATGATAGAAGAGGACTTTTCTAGAGAGGAAGGTAGGTGGACGAAAAATGCTGAGCAGACACAAGAGCTAGCTCGGGAACTTGAACTTGCTATCTTTTGCCATCTAGTGGAGGAGCTTTCAGAGGAGCTAGTATGTTAA 1407 0.4911 MAEKHLRELLKEDQEPFLLKHYVSERRRQLRRPSPNSTSQLKKKPQQTQLNNSNFPFNKCLLSLHNATKSPLLEFASPRKSPLRPSNAQTAALLLEAALRIHKHPNAKPKPNRALGLLGSLLKRLASRKRGVEGGAEVEGSCEVGRTCSCNARPSSAAWSESNEDKSLDLETSSSGHSFDDSVEEIEFLEKRKQDADSPCFDDHDFFCESPFRFFLQRSPNYSGRRTPEFSSPVASPSRHKTEDKEINGADGVNKFQSGEEAEDKEQCSPVSVLDPPFDDDGHENDHGEDGFDLDCSYANVQRTKQHLLDRLRRFEKLAELDPVELEKRMLDQEDEYETFIEDVDSETTCEEKAVRETVFEILCHSRVHDIQQAPEDLKRLVYDLIMEDEAEVNSSEERNMMIRRVCRRLELWKEVESNTIDMMIEEDFSREEGRWTKNAEQTQELARELELAIFCHLVEELSEELVC 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2543 468 PANTHER - 1 468 - -
Ssu7g2543 468 MobiDBLite consensus disorder prediction 223 287 - -
Ssu7g2543 468 MobiDBLite consensus disorder prediction 154 181 - -
Ssu7g2543 468 MobiDBLite consensus disorder prediction 26 53 - -
Ssu7g2543 468 MobiDBLite consensus disorder prediction 33 53 - -
Ssu7g2543 468 Pfam Domain of unknown function (DUF4378) 344 461 IPR025486 -
Ssu7g2543 468 PANTHER OS04G0572500 PROTEIN 1 468 - -
Ssu7g2543 468 MobiDBLite consensus disorder prediction 223 237 - -
Ssu7g2543 468 Coils Coil 298 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2543 Ssu-Chr7 50005500 50009543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2543 3 467 TRM (TON1 Recruiting Motif) Superfamily AT2G36420 32.596 1.36e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2543 - - gmx:100782984 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2543 7 50005500 50009543 Ssu7g2543 7 50005500 50009543 ECH
Ssu4g0894 4 14134177 14137360 Ssu7g2543 7 50005500 50009543 PCT