Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2542 ATGCAGAAACGAAGGGCGGGGAGGAAGAAGTTCCACGAGACACGTCACCCGGTTTACAAAGGAGTGAGGCAGAGGAACGGGAAGTGGGTGTGCGAGCTGCGACAGCCTAACAGCAAAAACGCACGTGTGTGGCTCGGAACCTTCGCGCGCCCCGACATGGCTGCTGTGGCGTACGACGTTGCCGCTTTGGCTTTCAAGGGCGACAGTGCTTCCTTGAACTTTCCGCACGCCGCTACCTCGTTGCCGCGACTTAACTCGCGAACGTGTTCCGTCAGAGCCATTCAGTTTGCGGCAACGCAAGCAGCGGAGAAGCACTTCCAAACGCAAAGGGATGCTTCCTCGGAGGAAGGTTCTGGAAGCTTCTTCTGGGACGAAGAGGAGGTGTTTAACATGCCGGGGTTGTTGAACAGCATGGCAGAAGCGTTGATCATCACACCGCCGGCTTTGCAAAATGGGTTCAATTGGGTTGGTGGGGAAACGACTGTGGACTTGAATCTATGGGGAAACTGA 510 0.5588 MQKRRAGRKKFHETRHPVYKGVRQRNGKWVCELRQPNSKNARVWLGTFARPDMAAVAYDVAALAFKGDSASLNFPHAATSLPRLNSRTCSVRAIQFAATQAAEKHFQTQRDASSEEGSGSFFWDEEEVFNMPGLLNSMAEALIITPPALQNGFNWVGGETTVDLNLWGN 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2542 169 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Ssu7g2542 169 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 167 - -
Ssu7g2542 169 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Ssu7g2542 169 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 7 167 - -
Ssu7g2542 169 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Ssu7g2542 169 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Ssu7g2542 169 PRINTS Ethylene responsive element binding protein signature 57 77 IPR001471 GO:0003700|GO:0006355
Ssu7g2542 169 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Ssu7g2542 169 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Ssu7g2542 169 SUPERFAMILY DNA-binding domain 18 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2542 Ssu-Chr7 49971672 49972181 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2542 3 167 AP2-EREBP Transcription Factor Family AT4G25490 46.196 1.91e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu7g2542 AP2 1.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2542 - - gmx:100778541 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2542 7 49971672 49972181 Ssu7g2542 7 49971672 49972181 ECH
Ssu7g2542 7 49971672 49972181 Ssu4g0898 4 14189959 14191500 PCT